RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 TGFB3P10600 412 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 GLRBP48167 497 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 SLC1A6P48664 564 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 ARHGAP1Q07960 439 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 TTC39BQ5VTQ0 682 aaPredicted RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 RAVER1Q8IY67 606 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 PCDH20Q8N6Y1 951 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 UBA3Q8TBC4 463 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 ZNF398Q8TD17 642 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 ZC3H15Q8WU90 426 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 TMEM79Q9BSE2 394 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 OXCT2Q9BYC2 517 aaPredicted RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 TRNAU1APQ9NX07 287 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 RPL26L1Q9UNX3 145 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 TTLL3Q9Y4R7 772 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 DOCK1Q14185 1865 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 ASB14A6NK59 587 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 ATG7O95352 703 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 PSMC3P17980 439 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 GARTP22102 1010 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 GRIA1P42261 906 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 GPC3P51654 580 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 CUL2Q13617 745 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 KRT72Q14CN4 511 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 ZACNQ401N2 412 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 IER5Q5VY09 327 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 OGFOD2Q6N063 350 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 RBM12BQ8IXT5 1001 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 KATNAL2Q8IYT4 538 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 STKLD1Q8NE28 680 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 DNAJB3Q8WWF6 145 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 DDX1Q92499 740 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 TRIM11Q96F44 468 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 ACO2Q99798 780 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 RPF1Q9H9Y2 349 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 PTTG2Q9NZH5 202 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 HMGXB4Q9UGU5 601 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 AURKCQ9UQB9 309 aa13.29□□□□□ -0.28
PTPRN-202ENST00000409251 MRPL42Q9Y6G3 142 aaKnown RBP13.29□□□□□ -0.28
PTPRN-202ENST00000409251 F8W8V4 182 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 PGK1P00558 417 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 C4BPAP04003 597 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 KRT3P12035 628 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 P4HA1P13674 534 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 EPHA3P29320 983 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 TYK2P29597 1187 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 SLC5A2P31639 672 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 STIP1P31948 543 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 EIF2B2P49770 351 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 ROR1Q01973 937 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 TNFAIP2Q03169 654 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CES4AQ5XG92 561 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 TAPT1Q6NXT6 567 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 KCTD17Q8N5Z5 321 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 HAPLN3Q96S86 360 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 ARHGAP39Q9C0H5 1083 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 hCG_1818297A0A087WSY0 165 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 ARHGEF37A1IGU5 675 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 LACTBL1A8MY62 500 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 BUD23O43709 281 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 RXRGP48443 463 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 RAP1GDS1P52306 607 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 TARBP2Q15633 366 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 HADHQ16836 314 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 SPRYD7Q5W111 196 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CATSPER4Q7RTX7 472 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CMC1Q7Z7K0 106 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 IFNLR1Q8IU57 520 aaPredicted RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 PQLC1Q8N2U9 271 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 JOSD2Q8TAC2 188 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 ZNF606Q8WXB4 792 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 SLCO2A1Q92959 643 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 SGF29Q96ES7 293 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 AGAP3Q96P47 875 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 TINF2Q9BSI4 451 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CDT1Q9H211 546 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 GOLGA2P5Q9HBQ8 144 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 FLRT1Q9NZU1 646 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 PCDHGA4Q9Y5G9 962 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 SAC3D1A6NKF1 404 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 LSM1O15116 133 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CLIC3O95833 236 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 STAG3L1P0CL83 205 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CSH1P0DML2 217 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CSH2P0DML3 217 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 UNGP13051 313 aaPredicted RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 TFE3P19532 575 aaPredicted RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 RGS7P49802 495 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 PLOD1Q02809 727 aaPredicted RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 TMEM198Q66K66 360 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 SLFN12LQ6IEE8 588 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 PLEKHA7Q6IQ23 1121 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 OLFML1Q6UWY5 402 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CHST15Q7LFX5 561 aaPredicted RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 NANOGNBQ7Z5D8 188 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 PLEKHH3Q7Z736 793 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 CCNYL1Q8N7R7 359 aa13.28□□□□□ -0.28
PTPRN-202ENST00000409251 PIWIL2Q8TC59 973 aaKnown RBP13.28□□□□□ -0.28
PTPRN-202ENST00000409251 ATP2A3Q93084 1043 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms