RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PARD6AQ9NPB6 346 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 OLA1Q9NTK5 396 aaKnown RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 SEPT11Q9NVA2 429 aaKnown RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 PARVAQ9NVD7 372 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 ZSCAN32Q9NX65 697 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 RRN3Q9NYV6 651 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 CNOT8Q9UFF9 292 aaKnown RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 CHORDC1Q9UHD1 332 aaPredicted RBP9.57□□□□□ -0.88
VPS53-203ENST00000401468 SCINQ9Y6U3 715 aa9.57□□□□□ -0.88
VPS53-203ENST00000401468 NUMA1Q14980 2115 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 CNOT1A5YKK6 2376 aaKnown RBP9.56□□□□□ -0.88
VPS53-203ENST00000401468 TMEM191CA6NGB0 347 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 C2CD4BA6NLJ0 364 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 TMCO5BA8MYB1 307 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 K7ESF4 209 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 COCHO43405 550 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 GREM1O60565 184 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 TLR5O60602 858 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 H2AFZP0C0S5 128 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 IRF1P10914 325 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 KRT3P12035 628 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 RARGP13631 454 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 NOS2P35228 1153 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 RFC1P35251 1148 aaPredicted RBP9.56□□□□□ -0.88
VPS53-203ENST00000401468 FLT3P36888 993 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 MATKP42679 507 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 PTPN9P43378 593 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 RPS9P46781 194 aaKnown RBP9.56□□□□□ -0.88
VPS53-203ENST00000401468 CXCL12P48061 93 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 VAV2P52735 878 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 KRT83P78385 493 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 ACAP1Q15027 740 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 HECTD3Q5T447 861 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 FAM102AQ5T9C2 384 aaPredicted RBP9.56□□□□□ -0.88
VPS53-203ENST00000401468 SYPL2Q5VXT5 272 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 OR6B2Q6IFH4 312 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 H2AFVQ71UI9 128 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 DNAAF5Q86Y56 855 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 NIPA2Q8N8Q9 360 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 ZNF653Q96CK0 615 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 ARHGEF26Q96DR7 871 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 NPY6RQ99463 290 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 FAM83CQ9BQN1 747 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 SYNCQ9H7C4 482 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 CCSER2Q9H7U1 834 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 MRPL47Q9HD33 250 aaKnown RBP9.56□□□□□ -0.88
VPS53-203ENST00000401468 DUS2Q9NX74 493 aaKnown RBP9.56□□□□□ -0.88
VPS53-203ENST00000401468 UVRAGQ9P2Y5 699 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 FKBPLQ9UIM3 349 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 FBXO4Q9UKT5 387 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 USP18Q9UMW8 372 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 ARHGAP26Q9UNA1 814 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 PCDHA13Q9Y5I0 950 aa9.56□□□□□ -0.88
VPS53-203ENST00000401468 TRAV19A0A0A6YYK7 116 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 DCLK1O15075 740 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 RALAP11233 206 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 NCAM1P13591 858 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 HDCP19113 662 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 GJA4P35212 333 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 ATP5C1P36542 298 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 MAGEA1P43355 309 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 SLC6A11P48066 632 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 GALK1P51570 392 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 RPL7AP62424 266 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 KDSRQ06136 332 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 RING1Q06587 406 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 ZNF252P-AS1Q0IIN9 211 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 CCINQ13939 588 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 NR6A1Q15406 480 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 SPA17Q15506 151 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 ZNF77Q15935 545 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 RSPO4Q2I0M5 234 aaPredicted RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 SLC25A52Q3SY17 297 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 BTBD8Q5XKL5 378 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 CC2D1AQ6P1N0 951 aaPredicted RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 DNAJC24Q6P3W2 148 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 DGLUCYQ7Z3D6 616 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 TADA2BQ86TJ2 420 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 RALGPS2Q86X27 583 aaPredicted RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 RHOT2Q8IXI1 618 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 ZBTB44Q8NCP5 570 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 JOSD2Q8TAC2 188 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 DQX1Q8TE96 717 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 CTNNBL1Q8WYA6 563 aaPredicted RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 RFFLQ8WZ73 363 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 RUBCNQ92622 972 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 SLC39A13Q96H72 371 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 CALR3Q96L12 384 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 NELL2Q99435 816 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 LUC7LQ9NQ29 371 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 METTL5Q9NRN9 209 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 KCND1Q9NSA2 647 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 THG1LQ9NWX6 298 aaKnown RBP9.55□□□□□ -0.88
VPS53-203ENST00000401468 OBP2AQ9NY56 170 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 CALCOCO1Q9P1Z2 691 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 LCMT1Q9UIC8 334 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 DNMT3LQ9UJW3 386 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 NUDT5Q9UKK9 219 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 NAALADL1Q9UQQ1 740 aa9.55□□□□□ -0.88
VPS53-203ENST00000401468 HBS1LQ9Y450 684 aaKnown RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms