RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 A8MV72 311 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 HOXA3O43365 443 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TNFSF14O43557 240 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 RASSF9O75901 435 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 GGPS1O95749 300 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TMIGD3P0DMS9 266 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 GAAP10253 952 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 CPA1P15085 419 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 KRT4P19013 534 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TFEBP19484 476 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 HDAC4P56524 1084 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 HMGN5P82970 282 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 CAMK1Q14012 370 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 SF3B3Q15393 1217 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ZKSCAN8Q15776 578 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 C2orf76Q3KRA6 126 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ANKDD1AQ495B1 522 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 GALNTL6Q49A17 601 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 CCBE1Q6UXH8 406 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FAM83HQ6ZRV2 1179 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ZER1Q7Z7L7 766 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 METTL23Q86XA0 190 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FRMD1Q8N878 549 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 IL17RDQ8NFM7 739 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 GABPB2Q8TAK5 448 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 CCHCR1Q8TD31 782 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 SPSB4Q96A44 273 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 BICD1Q96G01 975 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 PPP1R13BQ96KQ4 1090 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 RUNDC3BQ96NL0 473 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 DACH2Q96NX9 599 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 NR1H4Q96RI1 486 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ABHD1Q96SE0 405 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 APOL6Q9BWW8 343 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TRIM6Q9C030 488 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ZCWPW1Q9H0M4 648 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 RANBP17Q9H2T7 1088 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 SLC35C2Q9NQQ7 365 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 MRPL15Q9P015 296 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FBXL5Q9UKA1 691 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 RPTORQ8N122 1335 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 MYBBP1AQ9BQG0 1328 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 KRT87PA6NCN2 255 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 FAM90A20PA6NIJ5 464 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 TNPO2O14787 897 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 ASAP2O43150 1006 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 TXNL1O43396 289 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 RRP9O43818 475 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 PPP6R2O75170 966 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 SEC22BO75396 215 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 CAMTA2O94983 1202 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 ANXA6P08133 673 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 KRT13P13646 458 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 PTPN2P17706 415 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 BTF3P20290 206 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 ACVR2AP27037 513 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 SERPINA4P29622 427 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 BSGP35613 385 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 TCF7P36402 384 aaPredicted RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 DUSP2Q05923 314 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 MGAT5Q09328 741 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 KLHL30Q0D2K2 578 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 ZNF805Q5CZA5 627 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 KRBOX4Q5JUW0 171 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 IRGCQ6NXR0 463 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 CAVIN1Q6NZI2 390 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 PLPPR4Q7Z2D5 763 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 PPP1R42Q7Z4L9 355 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 LINC00346Q8IVM7 164 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 DNAJC5GQ8N7S2 189 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 PCSK9Q8NBP7 692 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 SEPT1Q8WYJ6 367 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 CPT1BQ92523 772 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 CYFIP2Q96F07 1278 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 PERPQ96FX8 193 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 UROC1Q96N76 676 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 GBP5Q96PP8 586 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 DCLRE1CQ96SD1 692 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 THUMPD3Q9BV44 507 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 TEX13BQ9BXU2 312 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 SLC46A2Q9BY10 475 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 TNMDQ9H2S6 317 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 OPA3Q9H6K4 179 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 LIN28AQ9H9Z2 209 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 SIDT1Q9NXL6 827 aaKnown RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 MCM9Q9NXL9 1143 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 ING3Q9NXR8 418 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 AKAP7Q9P0M2 348 aaPredicted RBP4.37□□□□□ -1.71
HMGB1-204ENST00000399489 CACNG4Q9UBN1 327 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 ZDHHC8Q9ULC8 765 aa4.37□□□□□ -1.71
HMGB1-204ENST00000399489 CUX2O14529 1486 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 A0A0A6YYK5 440 aaPredicted RBP4.36□□□□□ -1.71
HMGB1-204ENST00000399489 LIPT2A6NK58 231 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 PRR5-ARHGAP8B1AHC4 643 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 RAB27BO00194 218 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 KINO60870 393 aaKnown RBP4.36□□□□□ -1.71
HMGB1-204ENST00000399489 LMNAP02545 664 aaKnown RBP4.36□□□□□ -1.71
HMGB1-204ENST00000399489 CD1AP06126 327 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 CYP21A2P08686 494 aa4.36□□□□□ -1.71
HMGB1-204ENST00000399489 DLDP09622 509 aaKnown RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms