RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 BCLAF3A2AJT9 711 aaKnown RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 HNRNPA1P09651 372 aaKnown RBP eCLIP27.61■■■□□ 2.01
MSX1-201ENST00000382723 HOXA9P31269 272 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 SERPINB6P35237 376 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 GPS1Q13098 491 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 BEND6Q5SZJ8 279 aaPredicted RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 ZNF683Q8IZ20 524 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 CCNYQ8ND76 341 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 AENQ8WTP8 325 aaKnown RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 TFB1MQ8WVM0 346 aaKnown RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 TIFAQ96CG3 184 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 SNF8Q96H20 258 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 CELF6Q96J87 481 aaKnown RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 QKIQ96PU8 341 aaKnown RBP eCLIP27.61■■■□□ 2.01
MSX1-201ENST00000382723 PRMT1Q99873 361 aaKnown RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 USP29Q9HBJ7 922 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 PCDH9Q9HC56 1237 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 DPP7Q9UHL4 492 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 ACSL4O60488 711 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 XYLBO75191 536 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 KLKB1P03952 638 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 CKMP06732 381 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 FAM153BP0C7A2 387 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 IVDP26440 423 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 STIP1P31948 543 aaKnown RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 SLC11A2P49281 568 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 IRAK1P51617 712 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 SMAD3P84022 425 aaKnown RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 FAM153CQ494X1 144 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 CCHCR1Q8TD31 782 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 TCEAL4Q96EI5 215 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 ZFRQ96KR1 1074 aaKnown RBP27.61■■■□□ 2.01
MSX1-201ENST00000382723 FAM153AQ9UHL3 310 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 CPQQ9Y646 472 aa27.61■■■□□ 2.01
MSX1-201ENST00000382723 CCDC195A0A1B0GUA6 201 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 RHOP08100 348 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 TACR2P21452 398 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 CALCOCO2Q13137 446 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 MTA1Q13330 715 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 PDK1Q15118 436 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 P3H1Q32P28 736 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 TAB3Q8N5C8 712 aaPredicted RBP27.6■■■□□ 2.01
MSX1-201ENST00000382723 IGSF8Q969P0 613 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 RPRD1AQ96P16 312 aaPredicted RBP27.6■■■□□ 2.01
MSX1-201ENST00000382723 ZYG11BQ9C0D3 744 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 PRDM12Q9H4Q4 367 aa27.6■■■□□ 2.01
MSX1-201ENST00000382723 OLFM2O95897 454 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 TNNT3P45378 269 aaPredicted RBP27.59■■■□□ 2.01
MSX1-201ENST00000382723 AP1B1Q10567 949 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 ZDHHC24Q6UX98 284 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 SHKBP1Q8TBC3 707 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 MYEOVQ96EZ4 313 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 NDFIP2Q9NV92 336 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 CDH23Q9H251 3354 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 CFAP69A5D8W1 941 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 SCAMP3O14828 347 aaKnown RBP27.59■■■□□ 2.01
MSX1-201ENST00000382723 PPP1R12AO14974 1030 aaPredicted RBP27.59■■■□□ 2.01
MSX1-201ENST00000382723 CNTN5O94779 1100 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 RPL22P35268 128 aaKnown RBP27.59■■■□□ 2.01
MSX1-201ENST00000382723 NTHL1P78549 312 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 DUSP6Q16828 381 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 RFWD3Q6PCD5 774 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 TFAP2DQ7Z6R9 452 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 LGI2Q8N0V4 545 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 EIF1ADQ8N9N8 165 aaKnown RBP27.59■■■□□ 2.01
MSX1-201ENST00000382723 FBXO25Q8TCJ0 367 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 ZDHHC18Q9NUE0 388 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 ZDHHC7Q9NXF8 308 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 WHRNQ9P202 907 aa27.59■■■□□ 2.01
MSX1-201ENST00000382723 TRAV19A0A0A6YYK7 116 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 HACD1B0YJ81 288 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 VAV1P15498 845 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 SLC6A4P31645 630 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 EPHA5P54756 1037 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 ZXDBP98169 803 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 ALFQ53S48 1182 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 FAM133BQ5BKY9 247 aaKnown RBP27.58■■■□□ 2.01
MSX1-201ENST00000382723 ACBD5Q5T8D3 534 aaPredicted RBP27.58■■■□□ 2.01
MSX1-201ENST00000382723 HEATR6Q6AI08 1181 aaKnown RBP27.58■■■□□ 2.01
MSX1-201ENST00000382723 ELMSAN1Q6PJG2 1045 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 GRASPQ7Z6J2 395 aaPredicted RBP27.58■■■□□ 2.01
MSX1-201ENST00000382723 CIR1Q86X95 450 aaPredicted RBP27.58■■■□□ 2.01
MSX1-201ENST00000382723 RTL3Q8N8U3 475 aaKnown RBP27.58■■■□□ 2.01
MSX1-201ENST00000382723 PRKD2Q9BZL6 878 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 KLC2Q9H0B6 622 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 ZNF446Q9NWS9 450 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 PPARGC1AQ9UBK2 798 aaKnown RBP27.58■■■□□ 2.01
MSX1-201ENST00000382723 AGO1Q9UL18 857 aaKnown RBP27.58■■■□□ 2.01
MSX1-201ENST00000382723 RAD54BQ9Y620 910 aa27.58■■■□□ 2.01
MSX1-201ENST00000382723 IGLV3-10A0A075B6K4 115 aa27.57■■■□□ 2
MSX1-201ENST00000382723 F5H5T6 163 aa27.57■■■□□ 2
MSX1-201ENST00000382723 ITIH2P19823 946 aa27.57■■■□□ 2
MSX1-201ENST00000382723 ITGA8P53708 1063 aa27.57■■■□□ 2
MSX1-201ENST00000382723 IZUMO3Q5VZ72 239 aa27.57■■■□□ 2
MSX1-201ENST00000382723 C12orf76Q8N812 135 aaPredicted RBP27.57■■■□□ 2
MSX1-201ENST00000382723 SLC46A2Q9BY10 475 aa27.57■■■□□ 2
MSX1-201ENST00000382723 ANAPC1Q9H1A4 1944 aa27.57■■■□□ 2
MSX1-201ENST00000382723 MTCL1Q9Y4B5 1905 aaKnown RBP27.57■■■□□ 2
MSX1-201ENST00000382723 DFFAO00273 331 aa27.57■■■□□ 2
MSX1-201ENST00000382723 TRDMT1O14717 391 aaKnown RBP27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms