RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 PIGVQ9NUD9 493 aa13.57□□□□□ -0.24
SQSTM1-201ENST00000360718 IL37Q9NZH6 218 aa13.57□□□□□ -0.24
SQSTM1-201ENST00000360718 SENP1Q9P0U3 644 aa13.57□□□□□ -0.24
SQSTM1-201ENST00000360718 AFF4Q9UHB7 1163 aaKnown RBP13.57□□□□□ -0.24
SQSTM1-201ENST00000360718 LINC01553A4QN01 128 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 FAM47DPA6NHR8 397 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 LIASO43766 372 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 CSPG5O95196 566 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 MAGEA10P43363 369 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 DYNLT1P63172 113 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 MMRN1Q13201 1228 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 DPYSL3Q14195 570 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 DPYSL2Q16555 572 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 EFHC2Q5JST6 749 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 RNF43Q68DV7 783 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 BBS12Q6ZW61 710 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 TDRPQ86YL5 185 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 GPR65Q8IYL9 337 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 CYP4X1Q8N118 509 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 FBXO32Q969P5 355 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 KLHL29Q96CT2 875 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 FAM118BQ9BPY3 351 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 C17orf80Q9BSJ5 609 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 FRMD8P1Q9BZ68 369 aaPredicted RBP13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 PCDH18Q9HCL0 1135 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 HSFX1Q9UBD0 423 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 PRKAG3Q9UGI9 489 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 NUDT5Q9UKK9 219 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 EXOC1LA0A1B0GW35 172 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 A0A1W2PQH9 124 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 ZNF487B1APH4 448 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 TEX28O15482 410 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 DNAJB1P25685 340 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 ARL4AP40617 200 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 PSEN1P49768 467 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 SLC18A1P54219 525 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 NCALDP61601 193 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 MPP2Q14168 576 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 SHHQ15465 462 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 RNF34Q969K3 372 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 ZNF670Q9BS34 389 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 PITPNM3Q9BZ71 974 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 WDR6Q9NNW5 1121 aaKnown RBP13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 MLXIPLQ9NP71 852 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 SAYSD1Q9NPB0 183 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 MCM8Q9UJA3 840 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 FZD10Q9ULW2 581 aa13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 MTCL1Q9Y4B5 1905 aaKnown RBP13.56□□□□□ -0.24
SQSTM1-201ENST00000360718 FAM92AA1XBS5 289 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 CTSAP10619 480 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 IL4RP24394 825 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 L1CAMP32004 1257 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 ELF1P32519 619 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 CA8P35219 290 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 ERVFC1P60507 584 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 CCDC15Q0P6D6 951 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 MORF4L2Q15014 288 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 TMED2Q15363 201 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 TAC4Q86UU9 113 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 PYROXD2Q8N2H3 581 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 DQX1Q8TE96 717 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 MAML1Q92585 1016 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 PWWP2AQ96N64 755 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 RNF157Q96PX1 679 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 WDCPQ9H6R7 721 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 TLR8Q9NR97 1041 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 MTMR10Q9NXD2 777 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 EURLQ9NYK6 297 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 GMIPQ9P107 970 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 SMG5Q9UPR3 1016 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 TRANK1O15050 2925 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 CNPP09543 421 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 CTNNB1P35222 781 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 BMPR1AP36894 532 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 SKIV2L2P42285 1042 aaKnown RBP13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 ALDH1A3P47895 512 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 RAB33AQ14088 237 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 PCGF5Q86SE9 256 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 ALLCQ8N6M5 410 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 GPATCH11Q8N954 259 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 FBF1Q8TES7 1133 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 NTAN1Q96AB6 310 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 FNIP2Q9P278 1114 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 FBXW11Q9UKB1 542 aa13.55□□□□□ -0.24
SQSTM1-201ENST00000360718 SLC38A8A6NNN8 435 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 APOC4-APOC2K7ER74 178 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 ATP5HO75947 161 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 APOC2P02655 101 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 SPATA31D3P0C874 917 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 ZFXP17010 805 aaPredicted RBP13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 TAF10Q12962 218 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 SPARCL1Q14515 664 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 TAF12Q16514 161 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 SPATA31D4Q6ZUB0 917 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 CENPUQ71F23 418 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 HAUS1Q96CS2 278 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 SMOC2Q9H3U7 446 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 CYP4F11Q9HBI6 524 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 RCOR3Q9P2K3 495 aaPredicted RBP13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 SAE1Q9UBE0 346 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms