RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CD48P09326 243 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CREB1P16220 341 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 FERP16591 822 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 KRT15P19012 456 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 COMTP21964 271 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TKTP29401 623 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 HOXC12P31275 282 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 IGFALSP35858 605 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PSMC4P43686 418 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MTIF2P46199 727 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 TM4SF4P48230 202 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CYP2J2P51589 502 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 FAM193AP78312 1265 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 GABREP78334 506 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 KRT83P78385 493 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CBX1P83916 185 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MAP2K1Q02750 393 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 SLC10A2Q12908 348 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 CUL2Q13617 745 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 C2CD6Q53TS8 623 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 KRT39Q6A163 491 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PAOXQ6QHF9 649 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ARCQ7LC44 396 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PRUNE1Q86TP1 453 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 SAPCD2Q86UD0 394 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TSPYL5Q86VY4 417 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 CREBRFQ8IUR6 639 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 KATNAL2Q8IYT4 538 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PQLC3Q8N755 202 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CEP112Q8N8E3 955 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ZMIZ2Q8NF64 920 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CMASQ8NFW8 434 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 JOSD2Q8TAC2 188 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MAML1Q92585 1016 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TADA1Q96BN2 335 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 HHIPL1Q96JK4 782 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 OLFM3Q96PB7 478 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 SLITRK1Q96PX8 696 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CPXM1Q96SM3 734 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 EIF2AQ9BY44 585 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 ZNF302Q9NR11 478 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MIOSQ9NXC5 875 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TTI1O43156 1089 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TSPAN6O43657 245 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TBC1D4O60343 1298 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 LRCH4O75427 683 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 FKBP9O95302 570 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CHRNA1P02708 482 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 IDEP14735 1019 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 RRM1P23921 792 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ADORA2AP29274 412 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 BMP8BP34820 402 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MAGEA1P43355 309 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MMP13P45452 471 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ACOT2P49753 483 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PTK6Q13882 451 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 SMC1AQ14683 1233 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 ZRSR1Q15695 479 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 KIAA0753Q2KHM9 967 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 SLC9C1Q4G0N8 1177 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 DUSP28Q4G0W2 176 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PHF19Q5T6S3 580 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ARHGEF16Q5VV41 709 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 BROXQ5VW32 411 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 AFMIDQ63HM1 303 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MFSD5Q6N075 450 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 DENND1BQ6P3S1 775 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 FKBP9P1Q75LS8 142 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ATG4DQ86TL0 474 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 FAM228AQ86W67 206 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PTRH1Q86Y79 214 aaKnown RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 IGDCC3Q8IVU1 814 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 CPXCR1Q8N123 301 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 Q8N1Y9 231 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 FBXL13Q8NEE6 735 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 NEK11Q8NG66 645 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 LMBR1Q8WVP7 490 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 GLG1Q92896 1179 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 VCPIP1Q96JH7 1222 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 PWWP2AQ96N64 755 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 JMJD8Q96S16 334 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 TRIM51Q9BSJ1 452 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 ARHGAP39Q9C0H5 1083 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 MMRN2Q9H8L6 949 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 KCNK12Q9HB15 430 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 AS3MTQ9HBK9 375 aa2.44□□□□□ -2.02
VPS54-202ENST00000354504 UBE2TQ9NPD8 197 aaPredicted RBP2.44□□□□□ -2.02
VPS54-202ENST00000354504 DOCK9Q9BZ29 2069 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 MYOFQ9NZM1 2061 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SRRM3A6NNA2 597 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 LACTBL1A8MY62 500 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 AGRPO00253 132 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PAPLNO95428 1278 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 SLC25A27O95847 323 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 PEX11BO96011 259 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 KRT14P02533 472 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 FTLP02792 175 aaPredicted RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 KCNE1P15382 129 aa2.43□□□□□ -2.02
VPS54-202ENST00000354504 OAS2P29728 719 aaKnown RBP2.43□□□□□ -2.02
VPS54-202ENST00000354504 ARRB2P32121 409 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms