RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 C12orf56Q8IXR9 622 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CPSF7Q8N684 471 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 SLC15A4Q8N697 577 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 MYCT1Q8N699 235 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ANGPTL6Q8NI99 470 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 RP9Q8TA86 221 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 ACMSDQ8TDX5 336 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 FNIP1Q8TF40 1166 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TFB1MQ8WVM0 346 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 SLITRK1Q96PX8 696 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 NPLQ9BXD5 320 aaPredicted RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 TMEM117Q9H0C3 514 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 C12orf65Q9H3J6 166 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CPNE5Q9HCH3 593 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CD320Q9NPF0 282 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 THG1LQ9NWX6 298 aaKnown RBP8.33□□□□□ -1.08
ATG4A-201ENST00000343524 IP6K2Q9UHH9 426 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 DSEQ9UL01 958 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CDC14AQ9UNH5 594 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 N6AMT1Q9Y5N5 214 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CDY2AQ9Y6F7 541 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 CDY1Q9Y6F8 540 aa8.33□□□□□ -1.08
ATG4A-201ENST00000343524 NUP98P52948 1817 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 ZNF541Q9H0D2 1346 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 USP17L3A6NCW0 530 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 USP17L4A6NCW7 530 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 VWA5AO00534 786 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 TIMM44O43615 452 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 GLRA3O75311 464 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 TOM1L1O75674 476 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 RALBP11234 206 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 KRT3P12035 628 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 ATF7P17544 494 aaPredicted RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 NCF2P19878 526 aaPredicted RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 MYF6P23409 242 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 SERPINB1P30740 379 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 SLC1A6P48664 564 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 IDH3AP50213 366 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 CSE1LP55060 971 aaKnown RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 NME5P56597 212 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 STX1BP61266 288 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 ADAM17P78536 824 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 CHRNEQ04844 493 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 CHRNDQ07001 517 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 BNIP3Q12983 259 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 KLF10Q13118 480 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 TFDP3Q5H9I0 405 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 WDR45BQ5MNZ6 344 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 PLA2G4FQ68DD2 849 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 GALNT18Q6P9A2 607 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 XKR5Q6UX68 686 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 Q6ZNB5 142 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 USP17L1Q7RTZ2 530 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 SLC47A2Q86VL8 602 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 FAM178BQ8IXR5 827 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 KIAA2013Q8IYS2 634 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 CADM3Q8N126 398 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 RNF169Q8NCN4 708 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 JDP2Q8WYK2 163 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 CPT1BQ92523 772 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 PBXIP1Q96AQ6 731 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 TMA16Q96EY4 203 aaKnown RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 DUS3LQ96G46 650 aaKnown RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 TXNDC15Q96J42 360 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 CNDP1Q96KN2 507 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 FAM20AQ96MK3 541 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 NT5C1BQ96P26 610 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 MECRQ9BV79 373 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 GPN2Q9H9Y4 310 aaPredicted RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 COPG2Q9UBF2 871 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 CHORDC1Q9UHD1 332 aaPredicted RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 XPO7Q9UIA9 1087 aaKnown RBP8.32□□□□□ -1.08
ATG4A-201ENST00000343524 RABL2BQ9UNT1 228 aa8.32□□□□□ -1.08
ATG4A-201ENST00000343524 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.31□□□□□ -1.08
ATG4A-201ENST00000343524 C1orf232A0A0U1RR37 186 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 EVPLLA8MZ36 301 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 GPR25O00155 361 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 TRIM38O00635 465 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 HTRA2O43464 458 aaPredicted RBP8.31□□□□□ -1.08
ATG4A-201ENST00000343524 EDIL3O43854 480 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 KLHL41O60662 606 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 H2AFYO75367 372 aaKnown RBP8.31□□□□□ -1.08
ATG4A-201ENST00000343524 IFNB1P01574 187 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 CD58P19256 250 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 EEF1DP29692 281 aaKnown RBP8.31□□□□□ -1.08
ATG4A-201ENST00000343524 PEX3P56589 373 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 TRAF2Q12933 501 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 MTMR2Q13614 643 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 RAB39AQ14964 217 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 ZFYVE27Q5T4F4 411 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 GPR107Q5VW38 600 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 BTBD8Q5XKL5 378 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 SPOCD1Q6ZMY3 1216 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 DCP2Q8IU60 420 aaKnown RBP8.31□□□□□ -1.08
ATG4A-201ENST00000343524 LILRA2Q8N149 483 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 ZNF786Q8N393 782 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 MFSD2AQ8NA29 543 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 FAM47BQ8NA70 645 aa8.31□□□□□ -1.08
ATG4A-201ENST00000343524 ATL1Q8WXF7 558 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms