RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TSGA10IPQ3SY00 556 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 ARMC4Q5T2S8 1044 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 ZNF470Q6ECI4 717 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 WDR49Q8IV35 697 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 C3orf20Q8ND61 904 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 SPATA20Q8TB22 786 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 CNPY3Q9BT09 278 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 ABCG8Q9H221 673 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 CYLDQ9NQC7 956 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 ADARB2Q9NS39 739 aaKnown RBP12.88□□□□□ -0.35
SDC3-201ENST00000336798 AHSPQ9NZD4 102 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 KDM6BO15054 1643 aa12.88□□□□□ -0.35
SDC3-201ENST00000336798 CES2O00748 559 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 FGRP09769 529 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 SKIV2L2P42285 1042 aaKnown RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 COLGALT2Q8IYK4 626 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 PRCCQ92733 491 aaPredicted RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 OMDQ99983 421 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 GPSM3Q9Y4H4 160 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 TEX28O15482 410 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 KRT33AO76009 404 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 DDNO94850 711 aaPredicted RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 OR56A5P0C7T3 313 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 PECAM1P16284 738 aaPredicted RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 CD151P48509 253 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 NPY2RP49146 381 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 GPR15P49685 360 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 SRSF11Q05519 484 aaKnown RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 INSCQ1MX18 579 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 XRRA1Q6P2D8 792 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 BRSK2Q8IWQ3 736 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 FAM81AQ8TBF8 368 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 NARS2Q96I59 477 aaKnown RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 PRRG3Q9BZD7 231 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 BPIFA1Q9NP55 256 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 KCNK1O00180 336 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 PABPC1P11940 636 aaKnown RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 FAM98BQ52LJ0 330 aaKnown RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 PCNX4Q63HM2 1172 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 ERO1BQ86YB8 467 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 CD302Q8IX05 232 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 AHI1Q8N157 1196 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 ZNF483Q8TF39 744 aaPredicted RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 DCUN1D5Q9BTE7 237 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 DAPK2Q9UIK4 370 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 FAM50BQ9Y247 325 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 C1orf232A0A0U1RR37 186 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 TBC1D3BA6NDS4 549 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 SMIM22K7EJ46 135 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 NDUFS2O75306 463 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 CALCAP01258 141 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 KRT6AP02538 564 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 KRT6BP04259 564 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 KRT6CP48668 564 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 NUP107P57740 925 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 BIKQ13323 160 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 KCTD21Q4G0X4 260 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 TAF2Q6P1X5 1199 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 MFSD7Q6UXD7 560 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 KIAA1324Q6UXG2 1013 aaKnown RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 AGBL3Q8NEM8 1001 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 ELMO1Q92556 727 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 TBL1YQ9BQ87 522 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 CCDC167Q9P0B6 97 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 SAMD9LQ8IVG5 1584 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 ACSL4O60488 711 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 ALOX12P18054 663 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 PTSQ03393 145 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 FASTKQ14296 549 aaKnown RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 SLC26A11Q86WA9 606 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 MPP4Q96JB8 637 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 C17orf75Q9HAS0 396 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 ELL3Q9HB65 397 aaPredicted RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 SEMA4BQ9NPR2 832 aaPredicted RBP12.87□□□□□ -0.35
SDC3-201ENST00000336798 TRIM17Q9Y577 477 aa12.87□□□□□ -0.35
SDC3-201ENST00000336798 SNPHO15079 494 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 AMD1P17707 334 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 AMPD2Q01433 879 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 BCL2L1Q07817 233 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 RBBP4Q09028 425 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 MFSD10Q14728 455 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 AP5B1Q2VPB7 878 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 FBXL19Q6PCT2 694 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 IL27RAQ6UWB1 636 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 LRRC74BQ6ZQY2 392 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 ZNF571Q7Z3V5 609 aaPredicted RBP12.86□□□□□ -0.35
SDC3-201ENST00000336798 MMADHCQ9H3L0 296 aaPredicted RBP12.86□□□□□ -0.35
SDC3-201ENST00000336798 SLC26A4O43511 780 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 POLR2EP19388 210 aaKnown RBP12.86□□□□□ -0.35
SDC3-201ENST00000336798 SLC22A9Q8IVM8 553 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 EID3Q8N140 333 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 METTL6Q8TCB7 284 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 WHRNQ9P202 907 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 A0A0A6YYK5 440 aaPredicted RBP12.86□□□□□ -0.35
SDC3-201ENST00000336798 FOSL2P15408 326 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 VPS72Q15906 364 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 CBWD6Q4V339 395 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 ARHGEF19Q8IW93 802 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 SLC2A14Q8TDB8 520 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 SYN2Q92777 582 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms