RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 YWHAZP63104 245 aaKnown RBP13.44□□□□□ -0.26
CPNE1-201ENST00000317677 MGAT5Q09328 741 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 AUHQ13825 339 aaKnown RBP13.44□□□□□ -0.26
CPNE1-201ENST00000317677 KRT81Q14533 505 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 SLC29A2Q14542 456 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 PDK2Q15119 407 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 DPYSL2Q16555 572 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 SLC25A52Q3SY17 297 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 LIN52Q52LA3 116 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 SNX30Q5VWJ9 437 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 SLC9A4Q6AI14 798 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 OVOS1Q6IE37 1185 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 CEP128Q6ZU80 1094 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 STRADAQ7RTN6 431 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 CCDC25Q86WR0 208 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 FAM131BQ86XD5 332 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 SIX6OS1Q8N1H7 587 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 PYROXD2Q8N2H3 581 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 SMARCD1Q96GM5 515 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 OLFM3Q96PB7 478 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 CENPKQ9BS16 269 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 TBC1D10AQ9BXI6 508 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 CDC42EP4Q9H3Q1 356 aaKnown RBP13.44□□□□□ -0.26
CPNE1-201ENST00000317677 SUN2Q9UH99 717 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 NAALADL1Q9UQQ1 740 aa13.44□□□□□ -0.26
CPNE1-201ENST00000317677 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.44□□□□□ -0.26
CPNE1-201ENST00000317677 I6L893 689 aaPredicted RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 SGK1O00141 431 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 USP17L7P0C7H9 530 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 TYMPP19971 482 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 EIF3EP60228 445 aaKnown RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 AP1B1Q10567 949 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 GPS1Q13098 491 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 MAP7Q14244 749 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 DCAF6Q58WW2 860 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 C1orf228Q6PIY5 440 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 EXOC3L1Q86VI1 746 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 TTC13Q8NBP0 860 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 UHMK1Q8TAS1 419 aaKnown RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 SCG3Q8WXD2 468 aaKnown RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 SLC7A6OSQ96CW6 309 aaPredicted RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 FRMD8P1Q9BZ68 369 aaPredicted RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 DENND2DQ9H6A0 471 aaPredicted RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 PCDH9Q9HC56 1237 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 ANLNQ9NQW6 1124 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 TMEM161AQ9NX61 479 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 PCDHB8Q9UN66 801 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 AP4E1Q9UPM8 1137 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 MFHAS1Q9Y4C4 1052 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 USP3Q9Y6I4 520 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 TTC3P53804 2025 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 FNDC1Q4ZHG4 1894 aaPredicted RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 TLDC2A0PJX2 215 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 MAP3K6O95382 1288 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 OR4Q2P0C623 313 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 ZNF24P17028 368 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 NOS2P35228 1153 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 RPL22P35268 128 aaKnown RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 GAD2Q05329 585 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 SF3A3Q12874 501 aaKnown RBP eCLIP13.43□□□□□ -0.262e-8■■■□□ 18.4
CPNE1-201ENST00000317677 PPP6R3Q5H9R7 873 aaPredicted RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 RNASEH2BQ5TBB1 312 aaKnown RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 METTL23Q86XA0 190 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 CRIPAKQ8N1N5 446 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 LRRN4Q8WUT4 740 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 SMC6Q96SB8 1091 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 ZNF670Q9BS34 389 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 FTHL17Q9BXU8 183 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 DHX35Q9H5Z1 703 aaKnown RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 NDUFA13Q9P0J0 144 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 HSFX1Q9UBD0 423 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 FZD10Q9ULW2 581 aa13.43□□□□□ -0.26
CPNE1-201ENST00000317677 PRG3Q9Y2Y8 225 aaPredicted RBP13.43□□□□□ -0.26
CPNE1-201ENST00000317677 TMEM189-UBE2V1I3L0A0 370 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 RASGRF2O14827 1237 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 ATP9BO43861 1147 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 SLC34A2O95436 690 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 IFNB1P01574 187 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 PABPC4LP0CB38 370 aaKnown RBP13.42□□□□□ -0.26
CPNE1-201ENST00000317677 RBP3P10745 1247 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 CYP2F1P24903 491 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 ATP5DP30049 168 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 CAV1Q03135 178 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 SLC34A1Q06495 639 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 SLC10A2Q12908 348 aaPredicted RBP13.42□□□□□ -0.26
CPNE1-201ENST00000317677 TFDP2Q14188 446 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 DNAJC14Q6Y2X3 702 aaPredicted RBP13.42□□□□□ -0.26
CPNE1-201ENST00000317677 VSIG1Q86XK7 387 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 SCLYQ96I15 445 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 MAGEB18Q96M61 343 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 CASD1Q96PB1 797 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 PPP1R12CQ9BZL4 782 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 EPB41L1Q9H4G0 881 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 NRDE2Q9H7Z3 1164 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 USP29Q9HBJ7 922 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 CNGB3Q9NQW8 809 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 PIGVQ9NUD9 493 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 ETNK2Q9NVF9 386 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 LNPEPQ9UIQ6 1025 aa13.42□□□□□ -0.26
CPNE1-201ENST00000317677 DSEQ9UL01 958 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms