RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 CASC4Q6P4E1 433 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 FBXL19Q6PCT2 694 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PIWIL4Q7Z3Z4 852 aaKnown RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 CLVS1Q8IUQ0 354 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 BSNDQ8WZ55 320 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 UHRF1Q96T88 793 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 RMDN3Q96TC7 470 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ADPGKQ9BRR6 497 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 CXorf21Q9HAI6 301 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PNPOQ9NVS9 261 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 MORF4L1Q9UBU8 362 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 COL2A1P02458 1487 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 MAST2Q6P0Q8 1798 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 H3BNH8 94 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 KPNA4O00629 521 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 AREL1O15033 823 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 MTSS1O43312 755 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 BMP2P12643 396 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 NPR1P16066 1061 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 EIF2AK2P19525 551 aaKnown RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 KCNA4P22459 653 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 THOP1P52888 689 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 OXCT1P55809 520 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ACTR2P61160 394 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 RELAQ04206 551 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PTPN11Q06124 597 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PDE1CQ14123 709 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 C16orf87Q6PH81 154 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 TMEM110Q86TL2 294 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 NSUN6Q8TEA1 469 aaKnown RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PPWD1Q96BP3 646 aaKnown RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 GATA5Q9BWX5 397 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 LRRC40Q9H9A6 602 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 CDYLQ9Y232 598 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 KIF13AQ9H1H9 1805 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 A0A0A0MRY4 1105 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 IQCA1LA6NCM1 817 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 LRRIQ4A6NIV6 560 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 AQP12BA6NM10 295 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ZNF195O14628 629 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 SERPINB7O75635 380 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 YBX3P16989 372 aaKnown RBP eCLIP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 XRCC1P18887 633 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 INPP5AQ14642 412 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 HACD2Q6Y1H2 254 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 AMIGO2Q86SJ2 522 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ZDHHC17Q8IUH5 632 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 AQP12AQ8IXF9 295 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 GALNT4Q8N4A0 578 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 TMEM102Q8N9M5 508 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ANKRD36BP1Q96IX9 119 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 FAM167AQ96KS9 214 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 SPATA13Q96N96 652 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 SORT1Q99523 831 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 TMEM79Q9BSE2 394 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 C1orf50Q9BV19 199 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 TARS2Q9BW92 718 aaKnown RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 SLC4A5Q9BY07 1137 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 SHCBP1LQ9BZQ2 653 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PKD2L2Q9NZM6 624 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 GNPTGQ9UJJ9 305 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 C16orf96A6NNT2 1141 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 CXorf49A8MYA2 514 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 GAS2O43903 313 aaKnown RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 AVILO75366 819 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PIAS1O75925 651 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 DDHD2O94830 711 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ATG7O95352 703 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ALDOAP04075 364 aaKnown RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 IL10P22301 178 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ARL4AP40617 200 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 POLD2P49005 469 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 LIMK2P53671 638 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 KCNQ4P56696 695 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PCLAFQ15004 111 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 RGS21Q2M5E4 152 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 SMTNL2Q2TAL5 461 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PIGGQ5H8A4 983 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 SCARA3Q6AZY7 606 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 NIPAL1Q6NVV3 410 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 DSELQ8IZU8 1212 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 BHLHE22Q8NFJ8 381 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 JOSD2Q8TAC2 188 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 TRUB1Q8WWH5 349 aaKnown RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 ACSF2Q96CM8 615 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-201ENST00000316707 KIFC3Q9BVG8 833 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 PORCNQ9H237 461 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 MYH6P13533 1939 aa4.89□□□□□ -1.63
PTPN13-201ENST00000316707 SNAP91O60641 907 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 SUPT3HO75486 399 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 DNAJB5O75953 348 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 MYCLP12524 364 aaPredicted RBP4.88□□□□□ -1.63
PTPN13-201ENST00000316707 ENO3P13929 434 aaPredicted RBP4.88□□□□□ -1.63
PTPN13-201ENST00000316707 PCSK6P29122 969 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 ATICP31939 592 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 SCNN1AP37088 669 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 MPP1Q00013 466 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 OCA2Q04671 838 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 SPANXN3Q5MJ09 141 aa4.88□□□□□ -1.63
PTPN13-201ENST00000316707 OR6B2Q6IFH4 312 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms