RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 DHRSXQ8N5I4 330 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TEX47Q8TBZ9 253 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 RAD9AQ99638 391 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 CBWD1Q9BRT8 395 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 ATP13A1Q9HD20 1204 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC40A1Q9NP59 571 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 PRMT8Q9NR22 394 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 TMEM98Q9Y2Y6 226 aa7.79□□□□□ -1.16
LIMCH1-201ENST00000313860 RPAP1Q9BWH6 1393 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM47DPA6NHR8 397 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM220BPB1ANY3 271 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PDCD5O14737 125 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 UBXN7O94888 489 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 NELFEP18615 380 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 USP14P54578 494 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 EIF6P56537 245 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 SREBF2Q12772 1141 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 Q1RN00 199 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 EMBQ6PCB8 327 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 MTHFD1LQ6UB35 978 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ARHGEF19Q8IW93 802 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 LNX2Q8N448 690 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 DCUN1D1Q96GG9 259 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PBKQ96KB5 322 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PPP1R10Q96QC0 940 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 LLPHQ9BRT6 129 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 APOL5Q9BWW9 433 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 KLHL4Q9C0H6 718 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 EPC1Q9H2F5 836 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ARMC7Q9H6L4 198 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF408Q9H9D4 720 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 SUCOQ9UBS9 1254 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PCDHGA8Q9Y5G5 932 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF254O75437 659 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 RSL1D1O76021 490 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 TNFAIP8O95379 198 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 TYK2P29597 1187 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PDE1AP54750 535 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 AIMP2Q13155 320 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PUM1Q14671 1186 aaKnown RBP eCLIP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 VPS26BQ4G0F5 336 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 BTBD8Q5XKL5 378 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 RNF139Q8WU17 664 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 SGF29Q96ES7 293 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 GRIP2Q9C0E4 1043 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 CRISPLD1Q9H336 500 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 NOD2Q9HC29 1040 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 POLHQ9Y253 713 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ZBTB14O43829 449 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 VAPBO95292 243 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 RAB3DO95716 219 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 IFNA17P01571 189 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 MYL2P10916 166 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PRPH2P23942 346 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 EIF4A1P60842 406 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 TCHHL1Q5QJ38 904 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 CYFIP1Q7L576 1253 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PIAS4Q8N2W9 510 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ATPAF2Q8N5M1 289 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 MFSD8Q8NHS3 518 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF596Q8TC21 504 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ATL1Q8WXF7 558 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 C7orf34Q96L11 122 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 HIF1ANQ9NWT6 349 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 RTEL1Q9NZ71 1219 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 IFT80Q9P2H3 777 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 CDH9Q9ULB4 789 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 GMPPBQ9Y5P6 360 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 HS6ST1O60243 411 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ANXA13P27216 316 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 VAC14Q08AM6 782 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 MSLNQ13421 630 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 TAF2Q6P1X5 1199 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PIWIL4Q7Z3Z4 852 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ESX1Q8N693 406 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 MKNK1Q9BUB5 465 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 FRMD8Q9BZ67 464 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 RGCCQ9H4X1 137 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 HBS1LQ9Y450 684 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PCDHGA9Q9Y5G4 932 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 DCLK1O15075 740 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 DHFRP00374 187 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 DNTTP04053 509 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ASLP04424 464 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 HIST1H2AGP0C0S8 130 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 TNNI3P19429 210 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 HIST1H2ADP20671 130 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 RPL14P50914 215 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 SV2CQ496J9 727 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 TNFAIP8L3Q5GJ75 292 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 OTUD3Q5T2D3 398 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM173BQ6P4H8 233 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 ARSKQ6UWY0 536 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 DCDC5Q6ZRR9 648 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 TMPRSS7Q7RTY8 843 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 GOLM1Q8NBJ4 401 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 OR8K1Q8NGG5 319 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 KRT35Q92764 455 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 PTPRN2Q92932 1015 aa7.78□□□□□ -1.16
LIMCH1-201ENST00000313860 HIST1H2AHQ96KK5 128 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms