RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 DKK3Q9UBP4 350 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 A0A087WXM4 84 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 PIK3CDO00329 1044 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 KRT20P35900 424 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 CCT8P50990 548 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 C1DQ13901 141 aaKnown RBP8.37□□□□□ -1.07
VPS41-202ENST00000310301 KCNT1Q5JUK3 1230 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 CACHD1Q5VU97 1274 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 AHI1Q8N157 1196 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 LENG1Q96BZ8 264 aaPredicted RBP8.37□□□□□ -1.07
VPS41-202ENST00000310301 ZNF333Q96JL9 665 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 PLEKHG4BQ96PX9 1271 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 APOL4Q9BPW4 351 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 AVENQ9NQS1 362 aaPredicted RBP8.37□□□□□ -1.07
VPS41-202ENST00000310301 IARS2Q9NSE4 1012 aaKnown RBP8.37□□□□□ -1.07
VPS41-202ENST00000310301 PNMA8BQ9ULN7 279 aaPredicted RBP8.37□□□□□ -1.07
VPS41-202ENST00000310301 NAALADL1Q9UQQ1 740 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 MRPS17Q9Y2R5 130 aaKnown RBP8.37□□□□□ -1.07
VPS41-202ENST00000310301 ARP10275 920 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 CAPZA2P47755 286 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 MTTPP55157 894 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 NCALDP61601 193 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 RPS7P62081 194 aaKnown RBP8.37□□□□□ -1.07
VPS41-202ENST00000310301 GRB14Q14449 540 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 PDK1Q15118 436 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 AGAP9Q5VTM2 703 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 UTS2BQ765I0 119 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 KLHL23Q8NBE8 558 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 FRMD8Q9BZ67 464 aaPredicted RBP8.37□□□□□ -1.07
VPS41-202ENST00000310301 KCTD10Q9H3F6 313 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 CLCA2Q9UQC9 943 aa8.37□□□□□ -1.07
VPS41-202ENST00000310301 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 SOAT2O75908 522 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 GLRBP48167 497 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 TUFMP49411 452 aaKnown RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 ACOT2P49753 483 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 CSE1LP55060 971 aaKnown RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 PUDPQ08623 228 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 SNRNP35Q16560 246 aaKnown RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 EPC2Q52LR7 807 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 TIGD5Q53EQ6 642 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 AGKQ53H12 422 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 C11orf63Q6NUN7 778 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 SGIP1Q9BQI5 828 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 SEMA6AQ9H2E6 1030 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 IL17RBQ9NRM6 502 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 TRPM5Q9NZQ8 1165 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 PCDHB8Q9UN66 801 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 INSL6Q9Y581 213 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 SNX9Q9Y5X1 595 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 A0A087WZ62 844 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 SMIM35A0A1B0GVV1 85 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 PCP4L1A6NKN8 68 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 PTGES3LE9PB15 166 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 MMP3P08254 477 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 TGM2P21980 687 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 DNAJB2P25686 324 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 FXR2P51116 673 aaKnown RBP eCLIP8.36□□□□□ -1.07
VPS41-202ENST00000310301 KPNA1P52294 538 aaPredicted RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 HPCAP84074 193 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 VAC14Q08AM6 782 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 EDRF1Q3B7T1 1238 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 PTRHD1Q6GMV3 140 aaKnown RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 MPZL3Q6UWV2 235 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 ATG14Q6ZNE5 492 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 ZNF554Q86TJ5 538 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 RAB42Q8N4Z0 105 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 ENGASEQ8NFI3 743 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 FDXACB1Q9BRP7 624 aaPredicted RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 PACSIN1Q9BY11 444 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 COPS7BQ9H9Q2 264 aaPredicted RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 PLGRKTQ9HBL7 147 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 RAB21Q9UL25 225 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 TMCC3Q9ULS5 477 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 SLC30A1Q9Y6M5 507 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 COMMD3-BMI1R4GMX3 469 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 CNTNAP2Q9UHC6 1331 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 A0A087X0T9 212 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 OGTO15294 1046 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 RIPK2O43353 540 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 FGF19O95750 216 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 CYP3A4P08684 503 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 FAM228BP0C875 321 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 GPD1P21695 349 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 FEN1P39748 380 aaKnown RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 MAGEA10P43363 369 aaPredicted RBP8.36□□□□□ -1.07
VPS41-202ENST00000310301 ANTXR2P58335 489 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 TAF5Q15542 800 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 ATP6AP1LQ52LC2 224 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 PERM1Q5SV97 790 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 TMEM26Q6ZUK4 368 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 CHMP1BQ7LBR1 199 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 ADCK2Q7Z695 626 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 RMND5AQ9H871 391 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 RNPEPL1Q9HAU8 725 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 COMMD8Q9NX08 183 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 TJP2Q9UDY2 1190 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 C4AP0C0L4 1744 aa8.36□□□□□ -1.07
VPS41-202ENST00000310301 SPATA31C2B4DYI2 1134 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms