RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 DDIT4Q9NX09 232 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 INTS6Q9UL03 887 aaKnown RBP20.21■□□□□ 0.83
LIME1-201ENST00000309546 CEP83Q9Y592 693 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 NYNRINQ9P2P1 1898 aaKnown RBP20.21■□□□□ 0.83
LIME1-201ENST00000309546 TPRP12270 2363 aaKnown RBP20.2■□□□□ 0.82
LIME1-201ENST00000309546 F5H5T6 163 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 FOXN3O00409 490 aaPredicted RBP20.2■□□□□ 0.82
LIME1-201ENST00000309546 HSF2BPO75031 334 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 IGLV3-19P01714 112 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 DNTTP04053 509 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 ASLP04424 464 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 ERBB2P04626 1255 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 FOXC1Q12948 553 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 KCNJ12Q14500 433 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 FSCBQ5H9T9 825 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 EFHC1Q5JVL4 640 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 MIIPQ5JXC2 388 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 C11orf57Q6ZUT1 292 aaPredicted RBP20.2■□□□□ 0.82
LIME1-201ENST00000309546 PDCL3Q9H2J4 239 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 FBRSQ9HAH7 460 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 SUN2Q9UH99 717 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 SLC12A6Q9UHW9 1150 aa20.2■□□□□ 0.82
LIME1-201ENST00000309546 A0A1B0GTW7 788 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 FAM170AA1A519 330 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 METTL12A8MUP2 240 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 MOCS3O95396 460 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 GLI1P08151 1106 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 ABCB4P21439 1286 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 CLCN1P35523 988 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 NUMBP49757 651 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 RPS14P62263 151 aaKnown RBP20.19■□□□□ 0.82
LIME1-201ENST00000309546 TTC31Q49AM3 519 aaPredicted RBP20.19■□□□□ 0.82
LIME1-201ENST00000309546 PTPN20Q4JDL3 420 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 PITRM1Q5JRX3 1037 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 ZNF776Q68DI1 518 aaPredicted RBP20.19■□□□□ 0.82
LIME1-201ENST00000309546 CIR1Q86X95 450 aaPredicted RBP20.19■□□□□ 0.82
LIME1-201ENST00000309546 DNASE2BQ8WZ79 361 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 TTC17Q96AE7 1141 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 SLC2A13Q96QE2 648 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.19■□□□□ 0.822e-10■■□□□ 12.5
LIME1-201ENST00000309546 ASNSD1Q9NWL6 643 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 EIF2B4Q9UI10 523 aaKnown RBP20.19■□□□□ 0.82
LIME1-201ENST00000309546 FHOD1Q9Y613 1164 aa20.19■□□□□ 0.82
LIME1-201ENST00000309546 KCNU1A8MYU2 1149 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 ACSL1P33121 698 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 CTSOP43234 321 aaPredicted RBP20.18■□□□□ 0.82
LIME1-201ENST00000309546 GRIK2Q13002 908 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 SEMA3BQ13214 749 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 NME3Q13232 169 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 DRAP1Q14919 205 aaPredicted RBP20.18■□□□□ 0.82
LIME1-201ENST00000309546 OLFML1Q6UWY5 402 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 DHX40Q8IX18 779 aaKnown RBP20.18■□□□□ 0.82
LIME1-201ENST00000309546 FAM71AQ8IYT1 594 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 GANCQ8TET4 914 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 MYO19Q96H55 970 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 C6orf106Q9H6K1 298 aaPredicted RBP20.18■□□□□ 0.82
LIME1-201ENST00000309546 SAMSN1Q9NSI8 373 aaKnown RBP20.18■□□□□ 0.82
LIME1-201ENST00000309546 KIAA1522Q9P206 1035 aaPredicted RBP20.18■□□□□ 0.82
LIME1-201ENST00000309546 ERVW-1Q9UQF0 538 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 CACNA1EQ15878 2313 aa20.18■□□□□ 0.82
LIME1-201ENST00000309546 BCAT2O15382 392 aaPredicted RBP20.17■□□□□ 0.82
LIME1-201ENST00000309546 SIN3BO75182 1162 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 DAB1O75553 588 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 SLC2A3P11169 496 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 CCR1P32246 355 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 SNX16P57768 344 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 SHC2P98077 582 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 RABGAP1LQ5R372 815 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 RNF219Q5W0B1 726 aaPredicted RBP20.17■□□□□ 0.82
LIME1-201ENST00000309546 APCDD1Q8J025 514 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 MRGPRX3Q96LB0 322 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 BTBD1Q9H0C5 482 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 TAB2Q9NYJ8 693 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 NFE2L3Q9Y4A8 694 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 ACACBO00763 2458 aa20.17■□□□□ 0.82
LIME1-201ENST00000309546 SPAARA0A1B0GVQ0 90 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 TTC34A8MYJ7 566 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 SEMA4FO95754 770 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 PDGFRAP16234 1089 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 BPIFB4P59827 614 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 SLC6A3Q01959 620 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 ZBTB16Q05516 673 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 KCNMA1Q12791 1236 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 EIF4EBP2Q13542 120 aaPredicted RBP20.16■□□□□ 0.82
LIME1-201ENST00000309546 HNRNPA1L2Q32P51 320 aaKnown RBP20.16■□□□□ 0.82
LIME1-201ENST00000309546 TAF3Q5VWG9 929 aa20.16■□□□□ 0.82
LIME1-201ENST00000309546 CCAR2Q8N163 923 aaKnown RBP20.16■□□□□ 0.82
LIME1-201ENST00000309546 RPL10LQ96L21 214 aaKnown RBP20.16■□□□□ 0.82
LIME1-201ENST00000309546 PRMT1Q99873 361 aaKnown RBP20.16■□□□□ 0.82
LIME1-201ENST00000309546 RSPH9Q9H1X1 276 aaPredicted RBP20.16■□□□□ 0.82
LIME1-201ENST00000309546 DNAAF2Q9NVR5 837 aaKnown RBP20.16■□□□□ 0.82
LIME1-201ENST00000309546 M0QYT0 321 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 RNASEH1O60930 286 aaKnown RBP20.15■□□□□ 0.82
LIME1-201ENST00000309546 SRPRAP08240 638 aaKnown RBP20.15■□□□□ 0.82
LIME1-201ENST00000309546 CYP11B1P15538 503 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 SPINK2P20155 84 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 EEF1GP26641 437 aaKnown RBP20.15■□□□□ 0.82
LIME1-201ENST00000309546 GGCXP38435 758 aa20.15■□□□□ 0.82
LIME1-201ENST00000309546 RNASE9P60153 205 aaKnown RBP20.15■□□□□ 0.82
LIME1-201ENST00000309546 SIM1P81133 766 aaPredicted RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms