RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 DMTF1Q9Y222 760 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 CASZ1Q86V15 1759 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 DDTLA6NHG4 134 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 TRIM38O00635 465 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 GSC2O15499 205 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 SLC6A3Q01959 620 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 TOP3AQ13472 1001 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 BLMHQ13867 455 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 C1DQ13901 141 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 UBAP2LQ14157 1087 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 SLC5A9Q2M3M2 681 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 PPP4R4Q6NUP7 873 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 C2orf69Q8N8R5 385 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 APBA2Q99767 749 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 NOL6Q9H6R4 1146 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ANAPC2Q9UJX6 822 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 DNM1LO00429 736 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 CYB561D2O14569 222 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 HS6ST1O60243 411 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ATG7O95352 703 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 TRAF3Q13114 568 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 MAPK11Q15759 364 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 CES3Q6UWW8 571 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 PCDH20Q8N6Y1 951 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 VAT1Q99536 393 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 SEPT5Q99719 369 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 RNPEPQ9H4A4 650 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 DYRK4Q9NR20 520 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 PNPLA3Q9NST1 481 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 PIH1D1Q9NWS0 290 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 CACNA2D2Q9NY47 1150 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 STK39Q9UEW8 545 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ADAM30Q9UKF2 790 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 PRPF19Q9UMS4 504 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ROBO3Q96MS0 1386 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 DYTNA2CJ06 578 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ACAT1P24752 427 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 PIK3R1P27986 724 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 GTF2BQ00403 316 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 CWF19L1Q69YN2 538 aaKnown RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 STYK1Q6J9G0 422 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 ISLR2Q6UXK2 745 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 PHF13Q86YI8 300 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 C8orf59Q8N0T1 100 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 C4orf32Q8N8J7 132 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 GTF3C2Q8WUA4 911 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 TNFRSF25Q93038 417 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 NDNQ99608 321 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 OSBPL11Q9BXB4 747 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 DPY30Q9C005 99 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 KLK14Q9P0G3 267 aa13.11□□□□□ -0.31
COL3A1-201ENST00000304636 SAE1Q9UBE0 346 aaPredicted RBP13.11□□□□□ -0.31
COL3A1-201ENST00000304636 CLUHO75153 1309 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ERI2A8K979 691 aaKnown RBP13.1□□□□□ -0.31
COL3A1-201ENST00000304636 KATNA1O75449 491 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 CSPG5O95196 566 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 SERPIND1P05546 499 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 MSH3P20585 1137 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 FGFR3P22607 806 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 SLC30A10Q6XR72 485 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 CLNKQ7Z7G1 428 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ALYREFQ86V81 257 aaKnown RBP13.1□□□□□ -0.31
COL3A1-201ENST00000304636 FBXO39Q8N4B4 442 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ITFG1Q8TB96 612 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 KAT2BQ92831 832 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 PWWP2AQ96N64 755 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 OSBPL7Q9BZF2 842 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ATF5Q9Y2D1 282 aaPredicted RBP13.1□□□□□ -0.31
COL3A1-201ENST00000304636 UMODL1Q5DID0 1318 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ATRNO75882 1429 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 A8MUI8 341 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 MLNP12872 115 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 SQLEQ14534 574 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 MFSD14CQ5VZR4 134 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ZNF470Q6ECI4 717 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 SEMA4DQ92854 862 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 REXO4Q9GZR2 422 aaKnown RBP13.1□□□□□ -0.31
COL3A1-201ENST00000304636 MYOZ2Q9NPC6 264 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 FBXO6Q9NRD1 293 aaPredicted RBP13.1□□□□□ -0.31
COL3A1-201ENST00000304636 KRT84Q9NSB2 600 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ARL8BQ9NVJ2 186 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 RBM22Q9NW64 420 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL3A1-201ENST00000304636 KIDINS220Q9ULH0 1771 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 CBFA2T3O75081 653 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 VAPBO95292 243 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 SLC2A4P14672 509 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 MZF1P28698 734 aaPredicted RBP13.1□□□□□ -0.31
COL3A1-201ENST00000304636 CNTN1Q12860 1018 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ABRAXAS1Q6UWZ7 409 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 POLNQ7Z5Q5 900 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ECHDC2Q86YB7 292 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 HS6ST3Q8IZP7 471 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 FNDC5Q8NAU1 212 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 NDEL1Q9GZM8 345 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ERVK-5Q9HDB9 667 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ACP6Q9NPH0 428 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 LIMD1Q9UGP4 676 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 hCG_1818297A0A087WSY0 165 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 TISP43B9A030 160 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 VEGFAP15692 232 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms