RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CADM1Q9BY67 442 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 LNPEPQ9UIQ6 1025 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 RPS6KL1Q9Y6S9 549 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 TRAFD1O14545 582 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 PGK1P00558 417 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 PTPN3P26045 913 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 CPA2P48052 419 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 OCRLQ01968 901 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 PDE1CQ14123 709 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 GDF6Q6KF10 455 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 RINLQ6ZS11 566 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 RASSF3Q86WH2 238 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 CDKL2Q92772 493 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 FCRL3Q96P31 734 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 APOL2Q9BQE5 337 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 DENND2DQ9H6A0 471 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 MKS1Q9NXB0 559 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 MRPL42Q9Y6G3 142 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 NUP205Q92621 2012 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 H0Y3Z8 333 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 MYCNP04198 464 aaPredicted RBP18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 KCNA4P22459 653 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 HOXC8P31273 242 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 AQP5P55064 265 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 RPL10AP62906 217 aaKnown RBP18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 PDE1BQ01064 536 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 FASTKD1Q53R41 847 aaKnown RBP18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 SPDYAQ5MJ70 313 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 N4BP2L1Q5TBK1 243 aaPredicted RBP18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 APBB2Q92870 758 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 C7orf26Q96N11 449 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 RRAGCQ9HB90 399 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 EIF2B3Q9NR50 452 aaKnown RBP18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 SLC38A7Q9NVC3 462 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 ZFATQ9P243 1243 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 FBXW11Q9UKB1 542 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 EMCNQ9ULC0 261 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 C15orf41Q9Y2V0 281 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 TSC2P49815 1807 aa18.83■□□□□ 0.61
SHKBP1-201ENST00000291842 ZBTB24O43167 697 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 DNAJC6O75061 913 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 LYPLA1O75608 230 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 CHRNA1P02708 482 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 LTFP02788 710 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 LHX1P48742 406 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 TIGD5Q53EQ6 642 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 TAF2Q6P1X5 1199 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 AGMOQ6ZNB7 445 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 TRIM42Q8IWZ5 723 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 PPP1R14CQ8TAE6 165 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 LBHD1Q9BQE6 289 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 UBP1Q9NZI7 540 aa18.83■□□□□ 0.6
SHKBP1-201ENST00000291842 ZNF236Q9UL36 1845 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 CCDC22O60826 627 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 PEX11AO75192 247 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 FBXO21O94952 628 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 GSRP00390 522 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 IL1BP01584 269 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 ITGA2BP08514 1039 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 RGS2P41220 211 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 TIFABQ6ZNK6 161 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 CYS1Q717R9 158 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 DNAAF3Q8N9W5 541 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 TRPV1Q8NER1 839 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 GIMAP7Q8NHV1 300 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 BTBD10Q9BSF8 475 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 COLEC11Q9BWP8 271 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 TKTL2Q9H0I9 626 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 CNGB3Q9NQW8 809 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 PPARGC1AQ9UBK2 798 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 TRPV2Q9Y5S1 764 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 HHLA1C9JL84 531 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 GYG2O15488 501 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 ITM2AO43736 263 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 POMCP01189 267 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 POLBP06746 335 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 ESRRAP11474 423 aaPredicted RBP18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 ABCG1P45844 678 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 ZBTB17Q13105 803 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 SEMA3BQ13214 749 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 STX3Q13277 289 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 CRLF3Q8IUI8 442 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 AZIN2Q96A70 460 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 CELF6Q96J87 481 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 NUDCD1Q96RS6 583 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 WDCPQ9H6R7 721 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 AGO3Q9H9G7 860 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 ZNF358Q9NW07 568 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 IGSF9Q9P2J2 1179 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 TXNDC16Q9P2K2 825 aa18.82■□□□□ 0.6
SHKBP1-201ENST00000291842 SF3B1O75533 1304 aaKnown RBP eCLIP18.81■□□□□ 0.66e-8■■■■■ 58.8
SHKBP1-201ENST00000291842 BDNFP23560 247 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 CNTFP26441 200 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 ZNF157P51786 506 aaPredicted RBP18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 BHLHA9Q7RTU4 235 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 CMC1Q7Z7K0 106 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 GPATCH11Q8N954 259 aa18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 N4BP2L2Q92802 583 aaPredicted RBP18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 ZNF669Q96BR6 464 aaPredicted RBP18.81■□□□□ 0.6
SHKBP1-201ENST00000291842 EBF4Q9BQW3 602 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms