RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 LAYNQ6UX15 382 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 TRIM59Q8IWR1 403 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 DHX40Q8IX18 779 aaKnown RBP13.23□□□□□ -0.29
CD44-203ENST00000278386 SCUBE3Q8IX30 993 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 ELOA2Q8IYF1 753 aaPredicted RBP13.23□□□□□ -0.29
CD44-203ENST00000278386 CFAP52Q8N1V2 620 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 AZIN2Q96A70 460 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 KREMEN1Q96MU8 473 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 TRIM62Q9BVG3 475 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 SGK2Q9HBY8 427 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 TM9SF3Q9HD45 589 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 TJP2Q9UDY2 1190 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 NCKAP1Q9Y2A7 1128 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 SLCO1B1Q9Y6L6 691 aa13.23□□□□□ -0.29
CD44-203ENST00000278386 E5RJQ4 531 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 FLRT2O43155 660 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 SIN3BO75182 1162 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 LUC7L3O95232 432 aaKnown RBP13.22□□□□□ -0.29
CD44-203ENST00000278386 FYNP06241 537 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 BMP6P22004 513 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 GNA15P30679 374 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 GPD2P43304 727 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 GRIA4P48058 902 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 MORC3Q14149 939 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 DCAF6Q58WW2 860 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 MS4A13Q5J8X5 152 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 PITRM1Q5JRX3 1037 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 RAP1GAP2Q684P5 730 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 DENND1BQ6P3S1 775 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 MMS22LQ6ZRQ5 1243 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 CREBRFQ8IUR6 639 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 LGI2Q8N0V4 545 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 FIBINQ8TAL6 211 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 ADAMTS14Q8WXS8 1223 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 BIRC7Q96CA5 298 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 MYEOVQ96EZ4 313 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 SRRTQ9BXP5 876 aaKnown RBP13.22□□□□□ -0.29
CD44-203ENST00000278386 PABPC3Q9H361 631 aaKnown RBP13.22□□□□□ -0.29
CD44-203ENST00000278386 UBE2TQ9NPD8 197 aaPredicted RBP13.22□□□□□ -0.29
CD44-203ENST00000278386 SNX11Q9Y5W9 270 aa13.22□□□□□ -0.29
CD44-203ENST00000278386 CABIN1Q9Y6J0 2220 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 KNL1Q8NG31 2342 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 SYNJ2BP-COX16A0A087WUM0 186 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 GOLGA8CPA6NN73 597 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 MID1O15344 667 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 CBFA2T3O75081 653 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 FGFR1OPO95684 399 aaKnown RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 CD27P26842 260 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 USP8P40818 1118 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 CTSOP43234 321 aaPredicted RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 PSMD8P48556 350 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 NUMBP49757 651 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 MARSP56192 900 aaKnown RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 SFSWAPQ12872 951 aaKnown RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 SUZ12Q15022 739 aaKnown RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 KIF19Q2TAC6 998 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 HNRNPA1L2Q32P51 320 aaKnown RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 SYPL2Q5VXT5 272 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 FOXR2Q6PJQ5 311 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 C1orf216Q8TAB5 229 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 RHBDD1Q8TEB9 315 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 TTC17Q96AE7 1141 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 MYO19Q96H55 970 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 SLC39A13Q96H72 371 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 LMLNQ96KR4 655 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 RSPH9Q9H1X1 276 aaPredicted RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 FAM204AQ9H8W3 233 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 POPDC2Q9HBU9 364 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 FBXL12Q9NXK8 326 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 COX16Q9P0S2 106 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 XPO7Q9UIA9 1087 aaKnown RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 INTS6Q9UL03 887 aaKnown RBP13.21□□□□□ -0.29
CD44-203ENST00000278386 SCML1Q9UN30 329 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 ERVW-1Q9UQF0 538 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 ANKRD6Q9Y2G4 727 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 CHD6Q8TD26 2715 aa13.21□□□□□ -0.29
CD44-203ENST00000278386 EDDM13A0A1B0GTR0 161 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 A0A1W2PP55 124 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 TTC34A8MYJ7 566 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 F5H5T6 163 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 PAPSS1O43252 624 aaPredicted RBP13.2□□□□□ -0.3
CD44-203ENST00000278386 GADD45BO75293 160 aaPredicted RBP13.2□□□□□ -0.3
CD44-203ENST00000278386 RNASEH2AO75792 299 aaKnown RBP13.2□□□□□ -0.3
CD44-203ENST00000278386 TRUB2O95900 331 aaKnown RBP13.2□□□□□ -0.3
CD44-203ENST00000278386 TACR2P21452 398 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 RPL34P49207 117 aaKnown RBP13.2□□□□□ -0.3
CD44-203ENST00000278386 CCT8P50990 548 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 C21orf59P57076 290 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 IL9RQ01113 521 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 PDCLQ13371 301 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 CST6Q15828 149 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 MEA1Q16626 185 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 ARHGAP44Q17R89 818 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 ZC3H12AQ5D1E8 599 aaKnown RBP13.2□□□□□ -0.3
CD44-203ENST00000278386 FSCBQ5H9T9 825 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 KIAA0895LQ68EN5 471 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 USP30Q70CQ3 517 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 GLRX5Q86SX6 157 aa13.2□□□□□ -0.3
CD44-203ENST00000278386 CIR1Q86X95 450 aaPredicted RBP13.2□□□□□ -0.3
CD44-203ENST00000278386 MMAAQ8IVH4 418 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms