RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TAS2R13Q9NYV9 303 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 PDP2Q9P2J9 529 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 KANSL3Q9P2N6 904 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 POLG2Q9UHN1 485 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 FEN1P39748 380 aaKnown RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 SCNN1GP51170 649 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 KPNA1P52294 538 aaPredicted RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 ZPBP2Q6X784 338 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 KIAA0319LQ8IZA0 1049 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 SENP8Q96LD8 212 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 TBCBQ99426 244 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 TBL1YQ9BQ87 522 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 AKR1A1P14550 325 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 SP100P23497 879 aaPredicted RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 POM121L1PQ3SYA9 428 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 USP39Q53GS9 565 aaKnown RBP11.7□□□□□ -0.54
USP53-201ENST00000274030 WSCD1Q658N2 575 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 CXCL17Q6UXB2 119 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 SERPINB11Q96P15 392 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 TUBGCP4Q9UGJ1 667 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 FBXO10Q9UK96 956 aa11.7□□□□□ -0.54
USP53-201ENST00000274030 NCOA3Q9Y6Q9 1424 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 LGALS2P05162 132 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 PSMB9P28065 219 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 PRKAA1Q13131 559 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 MAP4K3Q8IVH8 894 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 FAM126BQ8IXS8 530 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 TBCDQ9BTW9 1192 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 SEPT3Q9UH03 358 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 NFASCO94856 1347 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 SALL1Q9NSC2 1324 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 TMEM114B3SHH9 223 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 ATP9AO75110 1047 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 CLPTM1O96005 669 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 ZNF7P17097 686 aaPredicted RBP11.69□□□□□ -0.54
USP53-201ENST00000274030 UBA1P22314 1058 aaKnown RBP11.69□□□□□ -0.54
USP53-201ENST00000274030 SGCGQ13326 291 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 DGKZQ13574 1117 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 DPYSL3Q14195 570 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 CYP4Z1Q86W10 505 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 POMKQ9H5K3 350 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 VTA1Q9NP79 307 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 LIMD1Q9UGP4 676 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 NDUFAF1Q9Y375 327 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 AP4S1Q9Y587 144 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 CXCL11O14625 94 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 MAPK10P53779 464 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 ANKS6Q68DC2 871 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 MILR1Q7Z6M3 343 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 NETO2Q8NC67 525 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 TSEN2Q8NCE0 465 aaKnown RBP11.69□□□□□ -0.54
USP53-201ENST00000274030 OXNAD1Q96HP4 312 aaPredicted RBP11.69□□□□□ -0.54
USP53-201ENST00000274030 APOPT1Q96IL0 206 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 NSMCE2Q96MF7 247 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 KANSL1LA0AUZ9 987 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 RAD51BO15315 384 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 NUP107P57740 925 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 IRX1P78414 480 aaPredicted RBP11.69□□□□□ -0.54
USP53-201ENST00000274030 FAM228AQ86W67 206 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 SNX32Q86XE0 403 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 CENPTQ96BT3 561 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 ZBTB10Q96DT7 871 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 FAM84AQ96KN4 292 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 RNF145Q96MT1 663 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 SH3GL1Q99961 368 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 POPDC2Q9HBU9 364 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 VPS45Q9NRW7 570 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 CROTQ9UKG9 612 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 TSC22D4Q9Y3Q8 395 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 CAMSAP1Q5T5Y3 1602 aa11.69□□□□□ -0.54
USP53-201ENST00000274030 KIF1CO43896 1103 aaKnown RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 TBC1D12O60347 775 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 CYP2A7P20853 494 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 PLEKHA7Q6IQ23 1121 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 DDHD1Q8NEL9 900 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 ZNF75CPQ92670 426 aaPredicted RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 COPG1Q9Y678 874 aaKnown RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 MROH7Q68CQ1 1323 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 DYRK3O43781 588 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 GUCA1AP43080 201 aaPredicted RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 PKNOX1P55347 436 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 BCL2L1Q07817 233 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 VGLL4Q14135 290 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 ZC3H12AQ5D1E8 599 aaKnown RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 ZNF438Q7Z4V0 828 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 CREG2Q8IUH2 290 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 OR8H2Q8N162 312 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 OR52K1Q8NGK4 314 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 ANKRD49Q8WVL7 239 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 MARK4Q96L34 752 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 SEMA4BQ9NPR2 832 aaPredicted RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 THAP1Q9NVV9 213 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 PPP2R3BQ9Y5P8 575 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 KPNA6O60684 536 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 NFICP08651 508 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 PSMB4P28070 264 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 RAB27AP51159 221 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 SHROOM1Q2M3G4 852 aaPredicted RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 GJC2Q5T442 439 aaPredicted RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 NT5DC1Q5TFE4 455 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms