RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 MS4A4AQ96JQ5 239 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 RMDN2Q96LZ7 410 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 GALNT8Q9NY28 637 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 MARCOQ9UEW3 520 aaPredicted RBP16.71■□□□□ 0.27
CTCF-201ENST00000264010 SKIV2L2P42285 1042 aaKnown RBP16.7■□□□□ 0.26
CTCF-201ENST00000264010 RAB27AP51159 221 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 SCNN1GP51170 649 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 SH3BGRP55822 239 aaPredicted RBP16.7■□□□□ 0.26
CTCF-201ENST00000264010 FCGRTP55899 365 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 CCDC15Q0P6D6 951 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 UTS2BQ765I0 119 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 TRIML2Q8N7C3 387 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 ATXN7L3BQ96GX2 97 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 TMEM120AQ9BXJ8 343 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 NUF2Q9BZD4 464 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 CNGB3Q9NQW8 809 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 SLC12A4Q9UP95 1085 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.7■□□□□ 0.26
CTCF-201ENST00000264010 HCRTO43612 131 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 RASSF9O75901 435 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 MOCS2O96007 188 aaPredicted RBP16.7■□□□□ 0.26
CTCF-201ENST00000264010 KCNJ2P63252 427 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 C4orf50Q6ZRC1 276 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 ATPAF2Q8N5M1 289 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 BANPQ8N9N5 519 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 PTCH2Q9Y6C5 1203 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 TEX264Q9Y6I9 313 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 UTRNP46939 3433 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 ZNF487B1APH4 448 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 ZNF135P52742 658 aaPredicted RBP16.7■□□□□ 0.26
CTCF-201ENST00000264010 EPHB1P54762 984 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 SREBF2Q12772 1141 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 FAM35AQ86V20 835 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 URGCPQ8TCY9 931 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 USP33Q8TEY7 942 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 P2RY11Q96G91 374 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 MRPL46Q9H2W6 279 aaKnown RBP16.7■□□□□ 0.26
CTCF-201ENST00000264010 ARHGEF4Q9NR80 690 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 PIH1D1Q9NWS0 290 aaKnown RBP16.7■□□□□ 0.26
CTCF-201ENST00000264010 KAT6AQ92794 2004 aa16.7■□□□□ 0.26
CTCF-201ENST00000264010 HSPA4LO95757 839 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 MYL2P10916 166 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 PSMB4P28070 264 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 ROR2Q01974 943 aaKnown RBP16.69■□□□□ 0.26
CTCF-201ENST00000264010 RAB6CQ53S08 254 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 NAPEPLDQ6IQ20 393 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 MFN1Q8IWA4 741 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 PYROXD2Q8N2H3 581 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 RAB6CQ9H0N0 254 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 USP29Q9HBJ7 922 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 DTLQ9NZJ0 730 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 DCDC2Q9UHG0 476 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 ZNF180Q9UJW8 692 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 TP73O15350 636 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 POMCP01189 267 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 S100BP04271 92 aaPredicted RBP16.69■□□□□ 0.26
CTCF-201ENST00000264010 PFKMP08237 780 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 RPL9P32969 192 aaKnown RBP16.69■□□□□ 0.26
CTCF-201ENST00000264010 NAB1Q13506 487 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 ITFG2Q969R8 447 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 FGFR1P11362 822 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 MLNP12872 115 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 ERCC2P18074 760 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 ADRA1BP35368 520 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 GLB1LQ6UWU2 654 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.69■□□□□ 0.26
CTCF-201ENST00000264010 LPPQ93052 612 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 DTNBP1Q96EV8 351 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 FSD1LQ9BXM9 530 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 NDEL1Q9GZM8 345 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 CATSPERBQ9H7T0 1116 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 CHST12Q9NRB3 414 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 C20orf96Q9NUD7 363 aaPredicted RBP16.69■□□□□ 0.26
CTCF-201ENST00000264010 FZD10Q9ULW2 581 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 GIT1Q9Y2X7 761 aa16.69■□□□□ 0.26
CTCF-201ENST00000264010 ZNF646O15015 1829 aaPredicted RBP16.68■□□□□ 0.26
CTCF-201ENST00000264010 C2CD2LO14523 706 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 AIF1P55008 147 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 RNF220Q5VTB9 566 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 NACA2Q9H009 215 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 SAR1AQ9NR31 198 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 TRHDEQ9UKU6 1024 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 POLR2AP24928 1970 aaKnown RBP16.68■□□□□ 0.26
CTCF-201ENST00000264010 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.68■□□□□ 0.26
CTCF-201ENST00000264010 MFSD11O43934 449 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 METTL18O95568 372 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 JCHAINP01591 159 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 PAMP19021 973 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 ASPHQ12797 758 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 DMAP1Q9NPF5 467 aaPredicted RBP16.68■□□□□ 0.26
CTCF-201ENST00000264010 MRGBPQ9NV56 204 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 VANGL2Q9ULK5 521 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 ZMYND8Q9ULU4 1186 aaPredicted RBP16.68■□□□□ 0.26
CTCF-201ENST00000264010 CAPN15O75808 1086 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 FAM155BO75949 473 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 FAM163BP0C2L3 166 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 YY1P25490 414 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 PTPN4P29074 926 aa16.68■□□□□ 0.26
CTCF-201ENST00000264010 TPD52P55327 224 aaPredicted RBP16.68■□□□□ 0.26
CTCF-201ENST00000264010 CCL14Q16627 93 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms