RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SGF29Q96ES7 293 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 TSNARE1Q96NA8 513 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 TXNRD2Q9NNW7 524 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 PNPLA8Q9NP80 782 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 SLC39A10Q9ULF5 831 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 AK5Q9Y6K8 562 aa12.98□□□□□ -0.33
LIG1-201ENST00000263274 CLDN5O00501 218 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 TRPA1O75762 1119 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ENDOD1O94919 500 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 PGM3O95394 542 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ZFXP17010 805 aaPredicted RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 GNL1P36915 607 aaPredicted RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 RAP1GDS1P52306 607 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 IL31Q6EBC2 164 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 KYAT3Q6YP21 454 aaKnown RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 AGAP2Q99490 1192 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 GCOM2Q9BZD3 368 aaPredicted RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 LRRC4Q9HBW1 653 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIG1-201ENST00000263274 DCDC2Q9UHG0 476 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 TRIP11Q15643 1979 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 IDH3AP50213 366 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 PKNOX1P55347 436 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ADIGQ0VDE8 80 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ZNF618Q5T7W0 954 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 SLC9A4Q6AI14 798 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 OR52E8Q6IFG1 317 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ZNF534Q76KX8 674 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ST13P4Q8IZP2 240 aaPredicted RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 GALNT4Q8N4A0 578 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 DCLK2Q8N568 766 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 FAM81AQ8TBF8 368 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 SREK1Q8WXA9 508 aaKnown RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 ZNF778Q96MU6 729 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 S100A14Q9HCY8 104 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 hCG_2014768A0A024R1R8 64 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 A0A088AWK7 358 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 A0A0A0MRY4 1105 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 USP2O75604 605 aaPredicted RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 FGF3P11487 239 aaPredicted RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 CCR10P46092 362 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 PLPPR4Q7Z2D5 763 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 PLD6Q8N2A8 252 aaKnown RBP12.97□□□□□ -0.33
LIG1-201ENST00000263274 SPATA6LQ8N4H0 392 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ZNF781Q8N8C0 355 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 MCUQ8NE86 351 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 OR6Y1Q8NGX8 325 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIG1-201ENST00000263274 RNF34Q969K3 372 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 CMTM5Q96DZ9 223 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 SPATA13Q96N96 652 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ZNF112Q9UJU3 913 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ITGA11Q9UKX5 1188 aa12.97□□□□□ -0.33
LIG1-201ENST00000263274 ADM5C9JUS6 153 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 F8W8V4 182 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 ATP6V1B1P15313 513 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 GSTT1P30711 240 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 NUMBP49757 651 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 AQP4P55087 323 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 ABCE1P61221 599 aaKnown RBP12.96□□□□□ -0.33
LIG1-201ENST00000263274 SFT2D3Q587I9 215 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 MBLAC2Q68D91 279 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 FRMD7Q6ZUT3 714 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 DHDDSQ86SQ9 333 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 TASP1Q9H6P5 420 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 COG4Q9H9E3 785 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 SNX15Q9NRS6 342 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 C20orf96Q9NUD7 363 aaPredicted RBP12.96□□□□□ -0.33
LIG1-201ENST00000263274 BFARQ9NZS9 450 aa12.96□□□□□ -0.33
LIG1-201ENST00000263274 A0A096LPK6 155 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 BIRC5O15392 142 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 PHGDHO43175 533 aaKnown RBP12.96□□□□□ -0.34
LIG1-201ENST00000263274 TPD52L2O43399 206 aaKnown RBP12.96□□□□□ -0.34
LIG1-201ENST00000263274 RNASEH1O60930 286 aaKnown RBP12.96□□□□□ -0.34
LIG1-201ENST00000263274 GCATO75600 419 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 LGALS2P05162 132 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 EPHA3P29320 983 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 IRF9Q00978 393 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 ARCQ7LC44 396 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 NMD3Q96D46 503 aaKnown RBP12.96□□□□□ -0.34
LIG1-201ENST00000263274 MFSD3Q96ES6 412 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 PDP2Q9P2J9 529 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 COPG2Q9UBF2 871 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 KIAA1257Q9ULG3 409 aa12.96□□□□□ -0.34
LIG1-201ENST00000263274 FKBP6O75344 327 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 C22orf31O95567 290 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 C1QAP02745 245 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 AMHP03971 560 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 GSTA2P09210 222 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 NDUFV1P49821 464 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 PCLAFQ15004 111 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIG1-201ENST00000263274 NCBP2-AS2Q69YL0 99 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 CTU1Q7Z7A3 348 aaKnown RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 MYLK4Q86YV6 388 aaPredicted RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 SIX6OS1Q8N1H7 587 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 BEST2Q8NFU1 509 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 PPP2R3CQ969Q6 453 aa12.95□□□□□ -0.34
LIG1-201ENST00000263274 ZMAT2Q96NC0 199 aaKnown RBP12.95□□□□□ -0.34
LIG1-201ENST00000263274 OSMRQ99650 979 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms