RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CPA3P15088 417 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 GARTP22102 1010 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 GABRB2P47870 512 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 NOMO1Q15155 1222 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 NCCRP1Q6ZVX7 275 aaPredicted RBP14.72□□□□□ -0.05
SDC1-201ENST00000254351 LRRC43Q8N309 656 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 PLD5Q8N7P1 536 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 UBR7Q8N806 425 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 FAM47BQ8NA70 645 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 SYTL5Q8TDW5 730 aaPredicted RBP14.72□□□□□ -0.05
SDC1-201ENST00000254351 C6orf203Q9P0P8 240 aaPredicted RBP14.72□□□□□ -0.05
SDC1-201ENST00000254351 COX16Q9P0S2 106 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 COPG2Q9UBF2 871 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 CIDEBQ9UHD4 219 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 SFMBT1Q9UHJ3 866 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 PCDHA10Q9Y5I2 948 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 CASQ2O14958 399 aaPredicted RBP14.72□□□□□ -0.05
SDC1-201ENST00000254351 GNAO1P09471 354 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 MGAT1P26572 445 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 CHRNA5P30532 468 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 ZNF699Q32M78 642 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 THAP11Q96EK4 314 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 EBNA1BP2Q99848 306 aaKnown RBP14.72□□□□□ -0.05
SDC1-201ENST00000254351 FAM49BQ9NUQ9 324 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 PAK5Q9P286 719 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 STK39Q9UEW8 545 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 RIMS3Q9UJD0 308 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 SAC3D1A6NKF1 404 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 TMEM233B4DJY2 109 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 CHADO15335 359 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 PRKCHP24723 683 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 EPHX2P34913 555 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 XIAPP98170 497 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 C16orf87Q6PH81 154 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 ARCQ7LC44 396 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 TRIM50Q86XT4 487 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 AHI1Q8N157 1196 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 PDCD6IPQ8WUM4 868 aaKnown RBP14.72□□□□□ -0.05
SDC1-201ENST00000254351 RXFP2Q8WXD0 754 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 TWNKQ96RR1 684 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 RSAD1Q9HA92 442 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 WDR41Q9HAD4 459 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 TRNAU1APQ9NX07 287 aaKnown RBP14.72□□□□□ -0.05
SDC1-201ENST00000254351 RAB26Q9ULW5 256 aa14.72□□□□□ -0.05
SDC1-201ENST00000254351 GIPC1O14908 333 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 UGT1A6P19224 532 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 AVPR1AP37288 418 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 PGM5Q15124 567 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 LDLRAP1Q5SW96 308 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 NAT16Q8N8M0 369 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 KBTBD7Q8WVZ9 684 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 SGF29Q96ES7 293 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 SIGLEC10Q96LC7 697 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 ZNF341Q9BYN7 854 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 TUBGCP4Q9UGJ1 667 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 BARX2Q9UMQ3 279 aaPredicted RBP14.71□□□□□ -0.05
SDC1-201ENST00000254351 BIRC5O15392 142 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 SPAG6O75602 509 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 IL1BP01584 269 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 POLR2BP30876 1174 aaKnown RBP14.71□□□□□ -0.05
SDC1-201ENST00000254351 CSE1LP55060 971 aaKnown RBP14.71□□□□□ -0.05
SDC1-201ENST00000254351 LSM12Q3MHD2 195 aaKnown RBP14.71□□□□□ -0.05
SDC1-201ENST00000254351 FSCBQ5H9T9 825 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 GPR107Q5VW38 600 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 SERPINI1Q99574 410 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 EPB41L1Q9H4G0 881 aa14.71□□□□□ -0.05
SDC1-201ENST00000254351 ZNF195O14628 629 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 NRP1O14786 923 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 YAP1P46937 504 aaKnown RBP14.7□□□□□ -0.06
SDC1-201ENST00000254351 PACS1Q6VY07 963 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 XYLT1Q86Y38 959 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 SAMD3Q8N6K7 520 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 APBA2Q99767 749 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 SLC39A3Q9BRY0 314 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 TMEM39BQ9GZU3 492 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 NAA50Q9GZZ1 169 aaKnown RBP14.7□□□□□ -0.06
SDC1-201ENST00000254351 TMX2Q9Y320 296 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 A0A1W2PPW3 197 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 AP1G1O43747 822 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 NR4A1P22736 598 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 SNRPFP62306 86 aaKnown RBP14.7□□□□□ -0.06
SDC1-201ENST00000254351 BNIP3Q12983 259 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 MGAT5BQ3V5L5 792 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 ELMSAN1Q6PJG2 1045 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 CCNYL1Q8N7R7 359 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 HEXIM2Q96MH2 286 aaKnown RBP14.7□□□□□ -0.06
SDC1-201ENST00000254351 AGAP2Q99490 1192 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 ACO2Q99798 780 aaKnown RBP14.7□□□□□ -0.06
SDC1-201ENST00000254351 IL1RL2Q9HB29 575 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 UBIAD1Q9Y5Z9 338 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 TIPRLO75663 272 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 CD247P20963 164 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 CTBSQ01459 385 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 SULT2A1Q06520 285 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 EMC2Q15006 297 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 STILQ15468 1287 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 DCAF6Q58WW2 860 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 TRNP1Q6NT89 227 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 ZNF534Q76KX8 674 aa14.7□□□□□ -0.06
SDC1-201ENST00000254351 ACVR1CQ8NER5 493 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms