RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.99□□□□□ -0.17
LDLR-201ENST00000252444 CCDC124Q96CT7 223 aaKnown RBP13.99□□□□□ -0.17
LDLR-201ENST00000252444 TLR10Q9BXR5 811 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 ATP13A3Q9H7F0 1226 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 SLC28A3Q9HAS3 691 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 TUBGCP4Q9UGJ1 667 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 HAUS5O94927 633 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 HLA-DPA1P20036 260 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 PCID2Q5JVF3 399 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 IRF2BP1Q8IU81 584 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 NRDE2Q9H7Z3 1164 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 RASSF10A6NK89 507 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 VPS4BO75351 444 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 STMN1P16949 149 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 SLC10A6Q3KNW5 377 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 RPAINQ86UA6 219 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 XYLT1Q86Y38 959 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 SUSD6Q92537 303 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.99□□□□□ -0.17
LDLR-201ENST00000252444 STARD13Q9Y3M8 1113 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 TIMM13Q9Y5L4 95 aaPredicted RBP13.99□□□□□ -0.17
LDLR-201ENST00000252444 RPS6KL1Q9Y6S9 549 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 SRRM3A6NNA2 597 aaPredicted RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 L1CAMP32004 1257 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 ZNF33AQ06730 810 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 DMC1Q14565 340 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 TTC30AQ86WT1 665 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 SCUBE3Q8IX30 993 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 TTC30BQ8N4P2 665 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 KREMEN1Q96MU8 473 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 AGAP3Q96P47 875 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 FGF1P05230 155 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 OR56A5P0C7T3 313 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 GP5P40197 560 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 CSE1LP55060 971 aaKnown RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 CDH4P55283 916 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 ORC1Q13415 861 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 KIF19Q2TAC6 998 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 DRICH1Q6PGQ1 229 aaPredicted RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 ILDR2Q71H61 639 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 ALLCQ8N6M5 410 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 MAML1Q92585 1016 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 CASP10Q92851 521 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 PRPF18Q99633 342 aaKnown RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 DOLKQ9UPQ8 538 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 ARL2BPQ9Y2Y0 163 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 hCG_1818297A0A087WSY0 165 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 TISP43B9A030 160 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 CLASP2O75122 1294 aaKnown RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 SRP72O76094 671 aaKnown RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 INCA1Q0VD86 236 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 LLGL1Q15334 1064 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 TIGD5Q53EQ6 642 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 DAW1Q8N136 415 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 EMC1Q8N766 993 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 REPS1Q96D71 796 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 ZNF599Q96NL3 588 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 NMRAL1Q9HBL8 299 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 NT5MQ9NPB1 228 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 MRPS17Q9Y2R5 130 aaKnown RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 AOC2O75106 756 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 JCHAINP01591 159 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 MDH1P40925 334 aaKnown RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 EFTUD2Q15029 972 aaKnown RBP eCLIP13.98□□□□□ -0.171e-6■■■■□ 20.5
LDLR-201ENST00000252444 PPP1R26Q5T8A7 1209 aaPredicted RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 GDF6Q6KF10 455 aaPredicted RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 ANKMY2Q8IV38 441 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 STARD8Q92502 1023 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 C16orf70Q9BSU1 422 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 TEX12Q9BXU0 123 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 TTYH3Q9C0H2 523 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 CLIC5Q9NZA1 410 aa13.98□□□□□ -0.17
LDLR-201ENST00000252444 CORO1CQ9ULV4 474 aaPredicted RBP13.98□□□□□ -0.17
LDLR-201ENST00000252444 RNF103O00237 685 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 TPSB2P20231 275 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 TPSAB1Q15661 275 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 CCL14Q16627 93 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 ACMSDQ8TDX5 336 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 LPPQ93052 612 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 SNRNP25Q9BV90 132 aaKnown RBP13.97□□□□□ -0.17
LDLR-201ENST00000252444 MAGEH1Q9H213 219 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 IRAK4Q9NWZ3 460 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 SPACA6W5XKT8 324 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 ALDH1A2O94788 518 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 CSPG5O95196 566 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 CD151P48509 253 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 AFTPHQ6ULP2 937 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 MFSD7Q6UXD7 560 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 MREGQ8N565 214 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 C12orf50Q8NA57 414 aaPredicted RBP13.97□□□□□ -0.17
LDLR-201ENST00000252444 GIMAP4Q9NUV9 329 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 ZFP69BQ9UJL9 534 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 AP3M1Q9Y2T2 418 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 TAF1LQ8IZX4 1826 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 LIASO43766 372 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 RARAP10276 462 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 PCSK7Q16549 785 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 DNAL1Q4LDG9 190 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 KDM7AQ6ZMT4 941 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 SLC25A41Q8N5S1 370 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms