RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 GPR179Q6PRD1 2367 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 MTMR11A4FU01 709 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 DPYSL4O14531 572 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 ZNF197O14709 1029 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 LIASO43766 372 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 ABLIM3O94929 683 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 TTC4O95801 387 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 VDRP11473 427 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 GPD1P21695 349 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 KDELR1P24390 212 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 GPR17Q13304 367 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 PLD1Q13393 1074 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 AUHQ13825 339 aaKnown RBP8.94□□□□□ -0.98
VPS4B-201ENST00000238497 GRM2Q14416 872 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 TAOK1Q7L7X3 1001 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 LRRC34Q8IZ02 419 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 DCP1BQ8IZD4 617 aaKnown RBP8.94□□□□□ -0.98
VPS4B-201ENST00000238497 CACNA2D3Q8IZS8 1091 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 VCPIP1Q96JH7 1222 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 GCNAQ96QF7 691 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 RASSF4Q9H2L5 321 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 hCG_1818297A0A087WSY0 165 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 E2F8A0AVK6 867 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 SIGLEC16A6NMB1 481 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 TCP11X1B4DZS4 312 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 CD72P21854 359 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 GABRR2P28476 465 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 MRPL58Q14197 206 aaKnown RBP8.94□□□□□ -0.98
VPS4B-201ENST00000238497 IER5LQ5T953 404 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 GKAP1Q5VSY0 366 aaPredicted RBP8.94□□□□□ -0.98
VPS4B-201ENST00000238497 ANKRD22Q5VYY1 191 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 FBXW10Q5XX13 1052 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 C3orf62Q6ZUJ4 267 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 NT5DC4Q86YG4 428 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 ADGRF2Q8IZF7 708 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 XPO6Q96QU8 1125 aaKnown RBP8.94□□□□□ -0.98
VPS4B-201ENST00000238497 TSPAN18Q96SJ8 248 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 CRISPLD1Q9H336 500 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 LRRC4Q9HBW1 653 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 SAMD15Q9P1V8 674 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 NUDT5Q9UKK9 219 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 ITGA11Q9UKX5 1188 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 TPX2Q9ULW0 747 aaKnown RBP8.94□□□□□ -0.98
VPS4B-201ENST00000238497 NAALADL1Q9UQQ1 740 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 SPTBN2O15020 2390 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 SCN1AP35498 2009 aa8.94□□□□□ -0.98
VPS4B-201ENST00000238497 CA4P22748 312 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 HOXA9P31269 272 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 GPD2P43304 727 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 UBXN2BQ14CS0 331 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 EFTUD2Q15029 972 aaKnown RBP eCLIP8.93□□□□□ -0.982e-7■■■□□ 17.5
VPS4B-201ENST00000238497 TEAD2Q15562 447 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 CA9Q16790 459 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 DNAJB7Q7Z6W7 309 aaPredicted RBP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 YAF2Q8IY57 180 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 ARFGAP1Q8N6T3 406 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 CCDC110Q8TBZ0 833 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 AGAP3Q96P47 875 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 BRD9Q9H8M2 597 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 HOMER3Q9NSC5 361 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 FGFR1OP2Q9NVK5 253 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 FAM86C1Q9NVL1 165 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 XPO7Q9UIA9 1087 aaKnown RBP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 ZNF318Q5VUA4 2279 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 VWA8A3KMH1 1905 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 MYO18AQ92614 2054 aaKnown RBP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 TCRBV7S3A2A0A539 114 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 H0Y858 1186 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 LSM8O95777 96 aaKnown RBP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 ZBED1O96006 694 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 AVPR2P30518 371 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 MAN1A1P33908 653 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 VIPR2P41587 438 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 CDKN2BP42772 138 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 TUFMP49411 452 aaKnown RBP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 MAP3K7CLP57077 242 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 HIF1AQ16665 826 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 MTSS1LQ765P7 747 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 EXOC3L1Q86VI1 746 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 TTC30AQ86WT1 665 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 SPATA2LQ8IUW3 424 aaPredicted RBP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 PYROXD2Q8N2H3 581 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 TTC8Q8TAM2 541 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 TRIM56Q9BRZ2 755 aaKnown RBP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 EPB41L4BQ9H329 900 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 ZFP14Q9HCL3 533 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS4B-201ENST00000238497 PCDHB5Q9Y5E4 795 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 DOCK8Q8NF50 2099 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 LMNB2Q03252 620 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 CNGA2Q16280 664 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 DDR2Q16832 855 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 CENPUQ71F23 418 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.93□□□□□ -0.983e-6■■■■■ 50.8
VPS4B-201ENST00000238497 EDEM1Q92611 657 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 SIK2Q9H0K1 926 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 WHRNQ9P202 907 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 DUSP12Q9UNI6 340 aa8.93□□□□□ -0.98
VPS4B-201ENST00000238497 TBC1D4O60343 1298 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms