RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TMEM216Q9P0N5 145 aa19.21■□□□□ 0.67
CPSF3-201ENST00000238112 CCDC189A1A4V9 331 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 ENO4A6NNW6 628 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 SMIM24O75264 130 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 RECQL4O94761 1208 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 RALBP11234 206 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 MYL4P12829 197 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 PSEN1P49768 467 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 IDH3AP50213 366 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 ABCE1P61221 599 aaKnown RBP19.2■□□□□ 0.66
CPSF3-201ENST00000238112 ADIGQ0VDE8 80 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 GSTA3Q16772 222 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 SPANXN3Q5MJ09 141 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 GRTP1Q5TC63 336 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 TMCO4Q5TGY1 634 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 CES3Q6UWW8 571 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF567Q8N184 647 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 GSTCDQ8NEC7 633 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF560Q96MR9 790 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 SORT1Q99523 831 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 NXF3Q9H4D5 531 aaKnown RBP19.2■□□□□ 0.66
CPSF3-201ENST00000238112 PRDM12Q9H4Q4 367 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 ADARB2Q9NS39 739 aaKnown RBP19.2■□□□□ 0.66
CPSF3-201ENST00000238112 DAB1O75553 588 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 CD4P01730 458 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 CCDC153Q494R4 210 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 PID1Q7Z2X4 250 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 MAVSQ7Z434 540 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 APPL2Q8NEU8 664 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 NDRG1Q92597 394 aaKnown RBP19.2■□□□□ 0.66
CPSF3-201ENST00000238112 OPTNQ96CV9 577 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 TSC22D3Q99576 134 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 RGS17Q9UGC6 210 aaPredicted RBP19.2■□□□□ 0.66
CPSF3-201ENST00000238112 PPM1HQ9ULR3 514 aa19.2■□□□□ 0.66
CPSF3-201ENST00000238112 SF3B1O75533 1304 aaKnown RBP eCLIP19.2■□□□□ 0.662e-6■■■■■ 135.8
CPSF3-201ENST00000238112 XPO1O14980 1071 aaKnown RBP19.19■□□□□ 0.66
CPSF3-201ENST00000238112 PRKCGP05129 697 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 CPA3P15088 417 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 AKAP5P24588 427 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 CACNA2D1P54289 1103 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 ITGA9Q13797 1035 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF618Q5T7W0 954 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 PDPK2PQ6A1A2 396 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 OR52E8Q6IFG1 317 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 PAXIP1Q6ZW49 1069 aaPredicted RBP19.19■□□□□ 0.66
CPSF3-201ENST00000238112 PIGZQ86VD9 579 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 CMTM5Q96DZ9 223 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 TNIP3Q96KP6 325 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 ADAMTS10Q9H324 1103 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 TMPRSS4Q9NRS4 437 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 SNX15Q9NRS6 342 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 IGSF9Q9P2J2 1179 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 E2F8A0AVK6 867 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF792Q3KQV3 632 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 AAGABQ6PD74 315 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 ALKAL1Q6UXT8 129 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 GATA6Q92908 595 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 ECSITQ9BQ95 431 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 SPATS2LQ9NUQ6 558 aaKnown RBP19.19■□□□□ 0.66
CPSF3-201ENST00000238112 SETD4Q9NVD3 440 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 DDX43Q9NXZ2 648 aaKnown RBP19.19■□□□□ 0.66
CPSF3-201ENST00000238112 KLHL8Q9P2G9 620 aaPredicted RBP19.19■□□□□ 0.66
CPSF3-201ENST00000238112 STAP1Q9ULZ2 295 aa19.19■□□□□ 0.66
CPSF3-201ENST00000238112 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 EEF2KO00418 725 aaKnown RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 PIRO00625 290 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 SPTLC1O15269 473 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 USP1O94782 785 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 DDNO94850 711 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 ALOX15P16050 662 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 NCF2P19878 526 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 TKTP29401 623 aaKnown RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 SPRP35270 261 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 HARS2P49590 506 aaKnown RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 SERPINB8P50452 374 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 CDK7P50613 346 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 PITX1P78337 314 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 NME3Q13232 169 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 CMC1Q7Z7K0 106 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 NR1H4Q96RI1 486 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 LRRC40Q9H9A6 602 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 GJD2Q9UKL4 321 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 ADAM28Q9UKQ2 775 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 RBM47A0AV96 593 aaKnown RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 M0QYT0 321 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 CRABP2P29373 138 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 NOS2P35228 1153 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 PNPLA4P41247 253 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 DEUP1Q05D60 604 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 PAFAH1B3Q15102 231 aaKnown RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 RALGPS1Q5JS13 557 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 CFAP157Q5JU67 520 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 DCLK2Q8N568 766 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 OR52K1Q8NGK4 314 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF669Q96BR6 464 aaPredicted RBP19.18■□□□□ 0.66
CPSF3-201ENST00000238112 ATXN7L3BQ96GX2 97 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 OSMRQ99650 979 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 S100A14Q9HCY8 104 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 GDAP2Q9NXN4 497 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms