RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 SRGAP2O75044 1071 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 PRLRP16471 622 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 SP100P23497 879 aaPredicted RBP12.72□□□□□ -0.37
LINC00339-213ENST00000642137 IL4RP24394 825 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 GJC1P36383 396 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 ARL4AP40617 200 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 IFNAR2P48551 515 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 COPS2P61201 443 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 KRT81Q14533 505 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 EML3Q32P44 896 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 MPPE1Q53F39 396 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 ODF2Q5BJF6 829 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 ARTNQ5T4W7 220 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 FAM72AQ5TYM5 149 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 MANEALQ5VSG8 457 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 FAM72DQ6L9T8 149 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 FBXL22Q6P050 247 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 CHSY1Q86X52 802 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 FAM72BQ86X60 149 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 LGI2Q8N0V4 545 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 RAPGEF5Q92565 580 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 TSC1Q92574 1164 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 IRF7Q92985 503 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 RBM41Q96IZ5 413 aaKnown RBP12.72□□□□□ -0.37
LINC00339-213ENST00000642137 WDR24Q96S15 920 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 PRDM16Q9HAZ2 1276 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 KCNK12Q9HB15 430 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 PCDH18Q9HCL0 1135 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 SPHK2Q9NRA0 654 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.72□□□□□ -0.37
LINC00339-213ENST00000642137 STIM2Q9P246 746 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 VANGL2Q9ULK5 521 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 SNX10Q9Y5X0 201 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 MYO10Q9HD67 2058 aa12.72□□□□□ -0.37
LINC00339-213ENST00000642137 DOCK4Q8N1I0 1966 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 LRRD1A4D1F6 860 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 C3orf70A6NLC5 250 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 H3BRJ5 948 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 EEF2KO00418 725 aaKnown RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 ENC1O14682 589 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 CREB3O43889 395 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 LRIG2O94898 1065 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 NFATC1O95644 943 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 KRT1P04264 644 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 CYBBP04839 570 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 BMP1P13497 986 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 HOXC13P31276 330 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 CETN2P41208 172 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 MARCKSL1P49006 195 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 NR1H3Q13133 447 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 DPYSL3Q14195 570 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 TAZQ16635 292 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 PPP6R3Q5H9R7 873 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 RABGAP1LQ5R372 815 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 MPP7Q5T2T1 576 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 TTC39BQ5VTQ0 682 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 PAPD7Q5XG87 772 aaKnown RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 RFWD3Q6PCD5 774 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 RHBDF2Q6PJF5 856 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 SLC44A3Q8N4M1 653 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 ST13P5Q8NFI4 369 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 ALG3Q92685 438 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 IGSF8Q969P0 613 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 RNF25Q96BH1 459 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 TBC1D31Q96DN5 1066 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 PBKQ96KB5 322 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 NAPGQ99747 312 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 ZNF670Q9BS34 389 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 ZYG11BQ9C0D3 744 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 CWC15Q9P013 229 aaKnown RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 MARK1Q9P0L2 795 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 EFR3BQ9Y2G0 817 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 WNT6Q9Y6F9 365 aa12.71□□□□□ -0.37
LINC00339-213ENST00000642137 KIF26AQ9ULI4 1882 aaPredicted RBP12.71□□□□□ -0.37
LINC00339-213ENST00000642137 MYOFQ9NZM1 2061 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 TYW5A2RUC4 315 aaKnown RBP12.7□□□□□ -0.38
LINC00339-213ENST00000642137 CTAGE9A4FU28 777 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 C19orf67A6NJJ6 358 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 WASH4PA8MWX3 477 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 ESPNB1AK53 854 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 PI4K2BG5E9Z4 385 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 TRDMT1O14717 391 aaKnown RBP12.7□□□□□ -0.38
LINC00339-213ENST00000642137 SCAMP3O14828 347 aaKnown RBP12.7□□□□□ -0.38
LINC00339-213ENST00000642137 DAPK3O43293 454 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 ZNF500O60304 480 aaPredicted RBP12.7□□□□□ -0.38
LINC00339-213ENST00000642137 TSPAN3O60637 253 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 ATP1A1P05023 1023 aaKnown RBP12.7□□□□□ -0.38
LINC00339-213ENST00000642137 CD48P09326 243 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 PYGMP11217 842 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 RHOQP17081 205 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 GOT1P17174 413 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 GDI1P31150 447 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 CASQ1P31415 396 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 CDH4P55283 916 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 TPI1P60174 286 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 GAD2Q05329 585 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 RUNX3Q13761 415 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 GRM2Q14416 872 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 DHCR24Q15392 516 aa12.7□□□□□ -0.38
LINC00339-213ENST00000642137 ANKRD20A8PQ5CZ79 823 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms