RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 DDIASQ8IXT1 998 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 TXLNBQ8N3L3 684 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 OR52N4Q8NGI2 321 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 TMEM174Q8WUU8 243 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 KAT2AQ92830 837 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 INPP5DQ92835 1189 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 THOC3Q96J01 351 aaKnown RBP4.75□□□□□ -1.65
CD44-239ENST00000639002 CTAGE1Q96RT6 745 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 ZPBPQ9BS86 351 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 TRIM2Q9C040 744 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 SPAG4Q9NPE6 437 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 FZD3Q9NPG1 666 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 WWOXQ9NZC7 414 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 IPO11Q9UI26 975 aaKnown RBP4.75□□□□□ -1.65
CD44-239ENST00000639002 ANAPC4Q9UJX5 808 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 CKAP5Q14008 2032 aa4.75□□□□□ -1.65
CD44-239ENST00000639002 ZNF335Q9H4Z2 1342 aaPredicted RBP4.74□□□□□ -1.65
CD44-239ENST00000639002 LOC105369274A0A096LPK9 316 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 LOC102723532A0A0G2JNH3 316 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 M0QYT0 321 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 SPTLC2O15270 562 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 ZC3H11AO75152 810 aaKnown RBP eCLIP4.74□□□□□ -1.65
CD44-239ENST00000639002 FGF18O76093 207 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 CNTN5O94779 1100 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 IDEP14735 1019 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 TBXAS1P24557 533 aaPredicted RBP4.74□□□□□ -1.65
CD44-239ENST00000639002 HOXA11P31270 313 aaPredicted RBP4.74□□□□□ -1.65
CD44-239ENST00000639002 KRTAP10-7P60409 375 aaPredicted RBP4.74□□□□□ -1.65
CD44-239ENST00000639002 SAFBQ15424 915 aaKnown RBP eCLIP4.74□□□□□ -1.65
CD44-239ENST00000639002 ZNF585BQ52M93 769 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 C6orf10Q5SRN2 563 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 SKAP1Q86WV1 359 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 GPSM1Q86YR5 675 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 RASGRP3Q8IV61 690 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 OR4N4Q8N0Y3 316 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 BRI3BPQ8WY22 251 aa4.74□□□□□ -1.65
CD44-239ENST00000639002 EIF3CQ99613 913 aaKnown RBP4.74□□□□□ -1.65
CD44-239ENST00000639002 PCDH17O14917 1159 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 PARNO95453 639 aaKnown RBP4.73□□□□□ -1.65
CD44-239ENST00000639002 NTSR2O95665 410 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 NGFRP08138 427 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 PEPDP12955 493 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 TRIM27P14373 513 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 TNFSF4P23510 183 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 TNFRSF8P28908 595 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 PGGT1BP53609 377 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 SHC2P98077 582 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 IFIT5Q13325 482 aaKnown RBP4.73□□□□□ -1.65
CD44-239ENST00000639002 GRM4Q14833 912 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 ISM2Q6H9L7 571 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 DLK2Q6UY11 383 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 KRT27Q7Z3Y8 459 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 PAQR4Q8N4S7 273 aaPredicted RBP4.73□□□□□ -1.65
CD44-239ENST00000639002 ABHD14AQ9BUJ0 271 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 EIF2AQ9BY44 585 aaKnown RBP4.73□□□□□ -1.65
CD44-239ENST00000639002 MYLK2Q9H1R3 596 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 PRDM16Q9HAZ2 1276 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 FBXO28Q9NVF7 368 aa4.73□□□□□ -1.65
CD44-239ENST00000639002 PNMA6EA0A0J9YXQ4 647 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 H0YGN5 161 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 TNFRSF13BO14836 293 aaPredicted RBP4.72□□□□□ -1.65
CD44-239ENST00000639002 IFNA2P01563 188 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 MYL3P08590 195 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 T-ENOLP0DO92 83 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 EEF1GP26641 437 aaKnown RBP4.72□□□□□ -1.65
CD44-239ENST00000639002 ZXDBP98169 803 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 SLC39A5Q6ZMH5 540 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 ADGRF3Q8IZF5 1079 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 FAM47BQ8NA70 645 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 SMRP1Q8NCR6 262 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 EPS8L2Q9H6S3 715 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 MAP6D1Q9H9H5 199 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.72□□□□□ -1.65
CD44-239ENST00000639002 PCDHA7Q9UN72 937 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 PROCRQ9UNN8 238 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 UBE2J1Q9Y385 318 aaPredicted RBP4.72□□□□□ -1.65
CD44-239ENST00000639002 LMTK3Q96Q04 1460 aa4.72□□□□□ -1.65
CD44-239ENST00000639002 RHODO00212 210 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 NKX2-8O15522 239 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 CER1O95813 267 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 IGFBP2P18065 325 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 TGM2P21980 687 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 CIITAP33076 1130 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 TM4SF4P48230 202 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 FOXL2P58012 376 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 CSHL1Q14406 222 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 AAK1Q2M2I8 961 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 TRAPPC11Q7Z392 1133 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 DPP9Q86TI2 863 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 PJA1Q8NG27 643 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 OIT3Q8WWZ8 545 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 PMM1Q92871 262 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 MIB2Q96AX9 1013 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 C18orf8Q96DM3 657 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 RIPOR3Q96MK2 946 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 METTL14Q9HCE5 456 aaKnown RBP4.71□□□□□ -1.66
CD44-239ENST00000639002 TXNRD2Q9NNW7 524 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 NECTIN3Q9NQS3 549 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 CA14Q9ULX7 337 aa4.71□□□□□ -1.66
CD44-239ENST00000639002 DPPA5A6NC42 116 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms