RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MEA1Q16626 185 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 P4HA3Q7Z4N8 544 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 RASAL3Q86YV0 1011 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ATP8B4Q8TF62 1192 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ERLEC1Q96DZ1 483 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SPATA5L1Q9BVQ7 753 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CAPN14A8MX76 684 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 MEIS2O14770 477 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 PSTPIP1O43586 416 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 RBP1P09455 135 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SKIV2L2P42285 1042 aaKnown RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TAS2R50P59544 299 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 FPGSQ05932 587 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 NDUFAF6Q330K2 333 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 UAP1L1Q3KQV9 507 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 NOMO2Q5JPE7 1267 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 EPHA10Q5JZY3 1008 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CYB5R4Q7L1T6 521 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TBC1D10CQ8IV04 446 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 WDR49Q8IV35 697 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 INPP5DQ92835 1189 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 FERD3LQ96RJ6 166 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SH3GL3Q99963 347 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 IRX2Q9BZI1 471 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 STRADBQ9C0K7 418 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TMEM117Q9H0C3 514 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 PIGUQ9H490 435 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 EXOSC4Q9NPD3 245 aaKnown RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CLIC5Q9NZA1 410 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 MCM8Q9UJA3 840 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 NDRG2Q9UN36 371 aaKnown RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ADM5C9JUS6 153 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 PLGP00747 810 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 RAB14P61106 215 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 E2F4Q16254 413 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 FAM171BQ6P995 826 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 FLCNQ8NFG4 579 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 RUBCNQ92622 972 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 PROX1Q92786 737 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 COL26A1Q96A83 441 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 IL12RB2Q99665 862 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 RIBC2Q9H4K1 309 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SNTG2Q9NY99 539 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SEPT3Q9UH03 358 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ADGRG1Q9Y653 693 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 IQGAP1P46940 1657 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 A0A0A6YYK5 440 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 RBMXL2O75526 392 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 CAMTA2O94983 1202 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 GJB1P08034 283 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TPBGLP0DKB5 382 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ENO3P13929 434 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ABRQ12979 859 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PTGES3Q15185 160 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 CCDC92Q53HC0 331 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 NBPF12Q5TAG4 269 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 FAM124AQ86V42 546 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 VSTM4Q8IW00 320 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 C3orf20Q8ND61 904 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 LPCAT1Q8NF37 534 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ELL3Q9HB65 397 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ARL15Q9NXU5 204 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 NEU2Q9Y3R4 380 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PCDHGC5Q9Y5F6 944 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TECPR2O15040 1411 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 MFAP3LO75121 409 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 RPL3P39023 403 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 NUDT2P50583 147 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 DENND1BQ6P3S1 775 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 C3orf62Q6ZUJ4 267 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 EPHX4Q8IUS5 362 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TDRD5Q8NAT2 981 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 CCDC54Q8NEL0 328 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 REPS2Q8NFH8 660 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 MYRIPQ8NFW9 859 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 OR52L1Q8NGH7 329 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 KIFC1Q9BW19 673 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SEZ6LQ9BYH1 1024 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 VPS45Q9NRW7 570 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 MYH7P12883 1935 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 C1orf167Q5SNV9 1468 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SDR42E2A6NKP2 422 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SEC24DO94855 1032 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ABCB1P08183 1280 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SLC35G4P0C7Q5 338 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 NR2C2P49116 596 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PTK7Q13308 1070 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ARMC4Q5T2S8 1044 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ADSSL1Q8N142 457 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 GINS4Q9BRT9 223 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TINF2Q9BSI4 451 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF518BQ9C0D4 1074 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 CRTAC1Q9NQ79 661 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 KIF1AQ12756 1690 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 NFASCO94856 1347 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 GSG1L2A8MUP6 293 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SNRPAP09012 282 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PRKAR2AP13861 404 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 H2AFXP16104 143 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TSC22D1Q15714 1073 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms