RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 C3orf38Q5JPI3 329 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 MBLAC2Q68D91 279 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 CLEC20AQ6ZU45 233 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 TADA2BQ86TJ2 420 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 HMGXB4Q9UGU5 601 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 SCML1Q9UN30 329 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 PCDHA5Q9Y5H7 936 aa15.19■□□□□ 0.02
CLN3-249ENST00000636685 NYNRINQ9P2P1 1898 aaKnown RBP15.18■□□□□ 0.02
CLN3-249ENST00000636685 UTP20O75691 2785 aaKnown RBP15.18■□□□□ 0.02
CLN3-249ENST00000636685 SIN3BO75182 1162 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 CLSTN1O94985 981 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 DLDP09622 509 aaKnown RBP15.18■□□□□ 0.02
CLN3-249ENST00000636685 RALAP11233 206 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 RBMS1P29558 406 aaKnown RBP15.18■□□□□ 0.02
CLN3-249ENST00000636685 ATICP31939 592 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 CLN3Q13286 438 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 SNRNP35Q16560 246 aaKnown RBP15.18■□□□□ 0.02
CLN3-249ENST00000636685 FAM217AQ8IXS0 508 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 MFSD2AQ8NA29 543 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 SYAP1Q96A49 352 aaPredicted RBP15.18■□□□□ 0.02
CLN3-249ENST00000636685 EPSTI1Q96J88 318 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 SLC46A1Q96NT5 459 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 OMDQ99983 421 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 GGA2Q9UJY4 613 aa15.18■□□□□ 0.02
CLN3-249ENST00000636685 SPTBN1Q01082 2364 aaKnown RBP15.17■□□□□ 0.02
CLN3-249ENST00000636685 PMS2P1A4D2B8 440 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 FFAR2O15552 330 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 EFSO43281 561 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 PABPC1P11940 636 aaKnown RBP15.17■□□□□ 0.02
CLN3-249ENST00000636685 PPP2CBP62714 309 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 PPP2CAP67775 309 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 CYP24A1Q07973 514 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 PDE4CQ08493 712 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 PSMD6Q15008 389 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 CST6Q15828 149 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 MPPE1Q53F39 396 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 C4orf17Q53FE4 359 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 SGO2Q562F6 1265 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 NAPEPLDQ6IQ20 393 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 IGF2-ASQ6U949 168 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 KIAA0907Q7Z7F0 614 aaPredicted RBP15.17■□□□□ 0.02
CLN3-249ENST00000636685 AHI1Q8N157 1196 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 ZNF276Q8N554 614 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.17■□□□□ 0.02
CLN3-249ENST00000636685 OR4C6Q8NH72 309 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 EXTL1Q92935 676 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 CCDC97Q96F63 343 aaPredicted RBP15.17■□□□□ 0.02
CLN3-249ENST00000636685 PRR11Q96HE9 360 aaPredicted RBP15.17■□□□□ 0.02
CLN3-249ENST00000636685 CAAP1Q9H8G2 361 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 KIAA1586Q9HCI6 787 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 WDR70Q9NW82 654 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 UCKL1Q9NWZ5 548 aa15.17■□□□□ 0.02
CLN3-249ENST00000636685 SLC12A8A0AV02 714 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 RNASEH1O60930 286 aaKnown RBP15.16■□□□□ 0.02
CLN3-249ENST00000636685 PHACTR2O75167 634 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 ATP5BP06576 529 aaKnown RBP15.16■□□□□ 0.02
CLN3-249ENST00000636685 CKMT1AP12532 417 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 CR2P20023 1033 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 HOXD13P35453 343 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 PSEN1P49768 467 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 KIF11P52732 1056 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 NDST1P52848 882 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 ASIC1P78348 528 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 TLE1Q04724 770 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 BMT2Q1RMZ1 405 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 ISXQ2M1V0 245 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 ZNF699Q32M78 642 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 ZNF667Q5HYK9 610 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 SV2BQ7L1I2 683 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 CCDC186Q7Z3E2 898 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 MMAAQ8IVH4 418 aaKnown RBP15.16■□□□□ 0.02
CLN3-249ENST00000636685 CRYBG2Q8N1P7 616 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 OR14C36Q8NHC7 312 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 WFDC5Q8TCV5 224 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 ATXN7L3BQ96GX2 97 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 MYO19Q96H55 970 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 CCNL2Q96S94 520 aaPredicted RBP15.16■□□□□ 0.02
CLN3-249ENST00000636685 ARHGAP9Q9BRR9 750 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 VRTNQ9H8Y1 702 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 PANK4Q9NVE7 773 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 CLIC5Q9NZA1 410 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 MARCH2Q9P0N8 246 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 FZD4Q9ULV1 537 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 KIF3AQ9Y496 699 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 RP1P56715 2156 aa15.16■□□□□ 0.02
CLN3-249ENST00000636685 FRMD3A2A2Y4 597 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 FAM87AP0C7U9 286 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 POLR2EP19388 210 aaKnown RBP15.15■□□□□ 0.02
CLN3-249ENST00000636685 DGKAP23743 735 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 SLC8A1P32418 973 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 CD70P32970 193 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 CYP2J2P51589 502 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 ADPRHP54922 357 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 SFSWAPQ12872 951 aaKnown RBP15.15■□□□□ 0.02
CLN3-249ENST00000636685 HS1BP3Q53T59 392 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 FOXR1Q6PIV2 292 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 AADATQ8N5Z0 425 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 HPS3Q969F9 1004 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 CDK5RAP1Q96SZ6 601 aaKnown RBP15.15■□□□□ 0.02
CLN3-249ENST00000636685 ABCG4Q9H172 646 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms