RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 IMPACTQ9P2X3 320 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 XPO7Q9UIA9 1087 aaKnown RBP18.74■□□□□ 0.59
CLN3-239ENST00000628023 STOML2Q9UJZ1 356 aa18.74■□□□□ 0.59
CLN3-239ENST00000628023 MYOFQ9NZM1 2061 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 GOLGA6L7A0A1B0GV03 622 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 KCNU1A8MYU2 1149 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 F5H5T6 163 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 OPRD1P41143 372 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 EIF2DP41214 584 aaKnown RBP18.73■□□□□ 0.59
CLN3-239ENST00000628023 CXCR3P49682 368 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 GALK1P51570 392 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 ATXN1P54253 815 aaKnown RBP18.73■□□□□ 0.59
CLN3-239ENST00000628023 RPL7AP62424 266 aaKnown RBP18.73■□□□□ 0.59
CLN3-239ENST00000628023 EIF4EBP2Q13542 120 aaPredicted RBP18.73■□□□□ 0.59
CLN3-239ENST00000628023 GAB4Q2WGN9 574 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 PREPLQ4J6C6 727 aaPredicted RBP18.73■□□□□ 0.59
CLN3-239ENST00000628023 FAM133BQ5BKY9 247 aaKnown RBP18.73■□□□□ 0.59
CLN3-239ENST00000628023 PPP1R15BQ5SWA1 713 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 NADSYN1Q6IA69 706 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 RFWD3Q6PCD5 774 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 C12orf40Q86WS4 652 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 FAM131BQ86XD5 332 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 TMA16Q96EY4 203 aaKnown RBP18.73■□□□□ 0.59
CLN3-239ENST00000628023 ADAM33Q9BZ11 813 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 TKTL2Q9H0I9 626 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 GRPEL1Q9HAV7 217 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 SPTLC3Q9NUV7 552 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 DEC1Q9P2X7 70 aa18.73■□□□□ 0.59
CLN3-239ENST00000628023 CCP110O43303 1012 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 TACR2P21452 398 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 DRD1P21728 446 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 PSMA2P25787 234 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 SLC6A4P31645 630 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 SLC6A11P48066 632 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 ZNF143P52747 638 aaPredicted RBP18.72■□□□□ 0.59
CLN3-239ENST00000628023 ASTE1Q2TB18 679 aaPredicted RBP18.72■□□□□ 0.59
CLN3-239ENST00000628023 ARL13BQ3SXY8 428 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 TMEM196Q5HYL7 178 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 FYB2Q5VWT5 728 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 GRAMD4Q6IC98 578 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 STRADAQ7RTN6 431 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 LGI2Q8N0V4 545 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 SYNPOQ8N3V7 929 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 HJURPQ8NCD3 748 aaPredicted RBP18.72■□□□□ 0.59
CLN3-239ENST00000628023 CTNNBL1Q8WYA6 563 aaPredicted RBP18.72■□□□□ 0.59
CLN3-239ENST00000628023 PNKPQ96T60 521 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 CNPY3Q9BT09 278 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 ARHGEF4Q9NR80 690 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 CEP250Q9BV73 2442 aa18.72■□□□□ 0.59
CLN3-239ENST00000628023 PRR5-ARHGAP8B1AHC4 643 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 CACNG3O60359 315 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 TBL1XO60907 577 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 TULP3O75386 442 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 PAGE1O75459 146 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 PENKP01210 267 aaPredicted RBP18.71■□□□□ 0.59
CLN3-239ENST00000628023 APODP05090 189 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 H2AFZP0C0S5 128 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 TDGF1P13385 188 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 CNR2P34972 360 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 GALCP54803 685 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 ARHGAP8P85298 464 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 SATB1Q01826 763 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 LMNB2Q03252 620 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 MS4A13Q5J8X5 152 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 SH3PXD2AQ5TCZ1 1133 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 LAIR1Q6GTX8 287 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 FSTL4Q6MZW2 842 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 NUDT18Q6ZVK8 323 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 H2AFVQ71UI9 128 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 CCDC117Q8IWD4 279 aaPredicted RBP18.71■□□□□ 0.59
CLN3-239ENST00000628023 NUP85Q9BW27 656 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 SIK2Q9H0K1 926 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 RBM12Q9NTZ6 932 aaKnown RBP18.71■□□□□ 0.59
CLN3-239ENST00000628023 ARHGEF38Q9NXL2 777 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 STIM2Q9P246 746 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 USP18Q9UMW8 372 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 NENFQ9UMX5 172 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 DMXL1Q9Y485 3027 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 CACNA1AO00555 2505 aa18.71■□□□□ 0.59
CLN3-239ENST00000628023 PAPSS2O95340 614 aaPredicted RBP18.7■□□□□ 0.58
CLN3-239ENST00000628023 EGFP01133 1207 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 CYLC1P35663 651 aaPredicted RBP18.7■□□□□ 0.58
CLN3-239ENST00000628023 DGKGP49619 791 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 SGSHP51688 502 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 RSPO4Q2I0M5 234 aaPredicted RBP18.7■□□□□ 0.58
CLN3-239ENST00000628023 RABGAP1LQ5R372 815 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 PIK3R6Q5UE93 754 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 SCYL2Q6P3W7 929 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 PRR23BQ6ZRT6 265 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 BNIPLQ7Z465 357 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 ETFBKMTQ8IXQ9 262 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 PRICKLE1Q96MT3 831 aaPredicted RBP18.7■□□□□ 0.58
CLN3-239ENST00000628023 PACSIN1Q9BY11 444 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 IRX2Q9BZI1 471 aaPredicted RBP18.7■□□□□ 0.58
CLN3-239ENST00000628023 DLL3Q9NYJ7 618 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 HS3ST4Q9Y661 456 aa18.7■□□□□ 0.58
CLN3-239ENST00000628023 DCHS1Q96JQ0 3298 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 TBC1D3BA6NDS4 549 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 TMEM191CA6NGB0 347 aa18.69■□□□□ 0.58
CLN3-239ENST00000628023 ENDOD1O94919 500 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms