RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 KIAA1841Q6NSI8 718 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 BHLHA9Q7RTU4 235 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 TMEM173Q86WV6 379 aaPredicted RBP10.23□□□□□ -0.77
VTA1-205ENST00000620996 IGDCC3Q8IVU1 814 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 TTC16Q8NEE8 873 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 IRGQQ8WZA9 623 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 CASP10Q92851 521 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 PKMYT1Q99640 499 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 ZCWPW1Q9H0M4 648 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 KIF9Q9HAQ2 790 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 NMUR1Q9HB89 426 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 ABCC13Q9NSE7 274 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 NKIRAS1Q9NYS0 192 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 RRN3Q9NYV6 651 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 GMIPQ9P107 970 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 ZC3H7BQ9UGR2 993 aaKnown RBP10.23□□□□□ -0.77
VTA1-205ENST00000620996 USP3Q9Y6I4 520 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 CLUHO75153 1309 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 LRIG2O94898 1065 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 PAX3P23760 479 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 GCKP35557 465 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 XRCC4Q13426 336 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 MFSD5Q6N075 450 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.23□□□□□ -0.77
VTA1-205ENST00000620996 PSTKQ8IV42 348 aaKnown RBP10.23□□□□□ -0.77
VTA1-205ENST00000620996 NUP93Q8N1F7 819 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 PDCD7Q8N8D1 485 aaKnown RBP10.23□□□□□ -0.77
VTA1-205ENST00000620996 FBXO32Q969P5 355 aa10.23□□□□□ -0.77
VTA1-205ENST00000620996 TRIM56Q9BRZ2 755 aaKnown RBP10.23□□□□□ -0.77
VTA1-205ENST00000620996 RCOR3Q9P2K3 495 aaPredicted RBP10.23□□□□□ -0.77
VTA1-205ENST00000620996 GOLGA8RI6L899 631 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 PSMB4P28070 264 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 GRIA1P42261 906 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 ALDH7A1P49419 539 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 CRADDP78560 199 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 ACTN3Q08043 901 aaPredicted RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 PKN2Q16513 984 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 RTP2Q5QGT7 225 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 PM20D1Q6GTS8 502 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 TAS1R1Q7RTX1 841 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 VSIG1Q86XK7 387 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 DIS3LQ8TF46 1054 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 XPO6Q96QU8 1125 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 CCT8L2Q96SF2 557 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 KLF6Q99612 283 aaPredicted RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 TRIM62Q9BVG3 475 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 A0A0A0MRY4 1105 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 GMNCA6NCL1 334 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 PITPNM1O00562 1244 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 OAZ2O95190 189 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 ABHD2P08910 425 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 MMP13P45452 471 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 GEMIN4P57678 1058 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 USP46P62068 366 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 DPYSQ14117 519 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 SEPT7Q16181 437 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 NPWQ8N729 165 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 NTAN1Q96AB6 310 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 SPATA13Q96N96 652 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 SLC9A7Q96T83 725 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 PAFAH2Q99487 392 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 TMEM39AQ9NV64 488 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 SAGE1Q9NXZ1 904 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 PSMC3IPQ9P2W1 217 aaPredicted RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 CDY1Q9Y6F8 540 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 ZNF487B1APH4 448 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 EBAG9O00559 213 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 SYN3O14994 580 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 HOXA2O43364 376 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 TBX18O95935 607 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 CCR1P32246 355 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 STX2P32856 288 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 CXCR3P49682 368 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 DUSP4Q13115 394 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 NAA25Q14CX7 972 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 KLHL38Q2WGJ6 581 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 RELL1Q8IUW5 271 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 PPM1NQ8N819 430 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 ZNF473Q8WTR7 871 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 APBB2Q92870 758 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 SMC6Q96SB8 1091 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 WDR83Q9BRX9 315 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 MRPL9Q9BYD2 267 aaKnown RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 NACA2Q9H009 215 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 TRABDQ9H4I3 376 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 PAK6Q9NQU5 681 aaPredicted RBP10.22□□□□□ -0.77
VTA1-205ENST00000620996 UBP1Q9NZI7 540 aa10.22□□□□□ -0.77
VTA1-205ENST00000620996 HACD1B0YJ81 288 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 SMAPO00193 183 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 USP12O75317 370 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 PAGE1O75459 146 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 GCATO75600 419 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 DGKIO75912 1065 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 GALTP07902 379 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 INHBAP08476 426 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 SERPINB6P35237 376 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 ZKSCAN8Q15776 578 aaPredicted RBP10.21□□□□□ -0.77
VTA1-205ENST00000620996 C10orf120Q5SQS8 335 aa10.21□□□□□ -0.77
VTA1-205ENST00000620996 SLC39A5Q6ZMH5 540 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms