RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SCNN1AP37088 669 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 GALCP54803 685 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 NNTQ13423 1086 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 ALFQ53S48 1182 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 CHSY1Q86X52 802 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 CPXM2Q8N436 756 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 DTWD2Q8NBA8 298 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 PEBP4Q96S96 227 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 GPATCH2LQ9NWQ4 482 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 MPP6Q9NZW5 540 aa13.97□□□□□ -0.17
LINC00540-202ENST00000616974 A0A0U1RQJ8 604 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 GPD1P21695 349 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 SDC4P31431 198 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 CCR1P32246 355 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 CHKAP35790 457 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 KIR2DL1P43626 348 aaPredicted RBP13.96□□□□□ -0.17
LINC00540-202ENST00000616974 MLLT6P55198 1093 aaPredicted RBP13.96□□□□□ -0.17
LINC00540-202ENST00000616974 NR1H3Q13133 447 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 AUHQ13825 339 aaKnown RBP13.96□□□□□ -0.17
LINC00540-202ENST00000616974 EGFLAMQ63HQ2 1017 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 TXNRD3NBQ6F5E7 133 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 UNC45BQ8IWX7 931 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 ZNF683Q8IZ20 524 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 ALLCQ8N6M5 410 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 TERB1Q8NA31 727 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 MSANTD4Q8NCY6 345 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 ATRIPQ8WXE1 791 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 CENPIQ92674 756 aaPredicted RBP13.96□□□□□ -0.17
LINC00540-202ENST00000616974 TMA16Q96EY4 203 aaKnown RBP13.96□□□□□ -0.17
LINC00540-202ENST00000616974 PGAP3Q96FM1 320 aaPredicted RBP13.96□□□□□ -0.17
LINC00540-202ENST00000616974 BTN2A3PQ96KV6 586 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 PNKPQ96T60 521 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 CHRDQ9H2X0 955 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 WDCPQ9H6R7 721 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 NDFIP2Q9NV92 336 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.96□□□□□ -0.17
LINC00540-202ENST00000616974 ARHGEF38Q9NXL2 777 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 FBXO10Q9UK96 956 aa13.96□□□□□ -0.17
LINC00540-202ENST00000616974 INTS6Q9UL03 887 aaKnown RBP13.96□□□□□ -0.17
LINC00540-202ENST00000616974 NYNRINQ9P2P1 1898 aaKnown RBP13.96□□□□□ -0.18
LINC00540-202ENST00000616974 SOWAHDA6NJG2 315 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 ADAM23O75077 832 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 ENDOD1O94919 500 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 APOEP02649 317 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 DGKGP49619 791 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 GRSF1Q12849 480 aaKnown RBP eCLIP13.96□□□□□ -0.18
LINC00540-202ENST00000616974 TRIM14Q14142 442 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 C10orf76Q5T2E6 689 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 DCUN1D2Q6PH85 259 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 CYP4V2Q6ZWL3 525 aaPredicted RBP13.96□□□□□ -0.18
LINC00540-202ENST00000616974 ZNF366Q8N895 744 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 OSGEPQ9NPF4 335 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 ABCB8Q9NUT2 735 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 SPATA6Q9NWH7 488 aaPredicted RBP13.96□□□□□ -0.18
LINC00540-202ENST00000616974 DEC1Q9P2X7 70 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 STAP1Q9ULZ2 295 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 NEU3Q9UQ49 428 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 SHROOM3Q8TF72 1996 aa13.96□□□□□ -0.18
LINC00540-202ENST00000616974 SPTBN2O15020 2390 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 TBC1D3BA6NDS4 549 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 TMEM191CA6NGB0 347 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 SGK1O00141 431 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 RDXP35241 583 aaKnown RBP13.95□□□□□ -0.18
LINC00540-202ENST00000616974 SLC11A2P49281 568 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 ZNF143P52747 638 aaPredicted RBP13.95□□□□□ -0.18
LINC00540-202ENST00000616974 SNX16P57768 344 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 MAPK8IP2Q13387 824 aaPredicted RBP13.95□□□□□ -0.18
LINC00540-202ENST00000616974 PPP2R5DQ14738 602 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 SLC18A3Q16572 532 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 CA9Q16790 459 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 DGKKQ5KSL6 1271 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 TMEM92Q6UXU6 159 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 IL17RCQ8NAC3 791 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 NETO2Q8NC67 525 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 LMLNQ96KR4 655 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 MTG2Q9H4K7 406 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 WDR35Q9P2L0 1181 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 ZNF510Q9Y2H8 683 aa13.95□□□□□ -0.18
LINC00540-202ENST00000616974 SRGAP2O75044 1071 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 CTSOP43234 321 aaPredicted RBP13.94□□□□□ -0.18
LINC00540-202ENST00000616974 PTPN9P43378 593 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 ANGPT1Q15389 498 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 RNF43Q68DV7 783 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 ARCQ7LC44 396 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 TFAP2DQ7Z6R9 452 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 TMEM139Q8IV31 216 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 C1orf210Q8IVY1 113 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 CARNMT1Q8N4J0 409 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 KIAA1958Q8N8K9 716 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 CYB5D2Q8WUJ1 264 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 CACNA2D2Q9NY47 1150 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 MRPS17Q9Y2R5 130 aaKnown RBP13.94□□□□□ -0.18
LINC00540-202ENST00000616974 RAD54BQ9Y620 910 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 BZW2Q9Y6E2 419 aaKnown RBP13.94□□□□□ -0.18
LINC00540-202ENST00000616974 PI4KAP42356 2102 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 IL1R2P27930 398 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 RPS9P46781 194 aaKnown RBP13.94□□□□□ -0.18
LINC00540-202ENST00000616974 LMAN2Q12907 356 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 FUT11Q495W5 492 aa13.94□□□□□ -0.18
LINC00540-202ENST00000616974 MPPE1Q53F39 396 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms