RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TRIM49CP0CI26 452 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 CHRNB2P17787 502 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 ABCB4P21439 1286 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 RFC1P35251 1148 aaPredicted RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 GPD2P43304 727 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 PRELPP51888 382 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 NKX2-5P52952 324 aaPredicted RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 GNA12Q03113 381 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 PKN2Q16513 984 aaKnown RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 DALRD3Q5D0E6 543 aaKnown RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 ODR4Q5SWX8 454 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 FAM122CQ6P4D5 195 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 TMEM126BQ8IUX1 230 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 DTX3Q8N9I9 347 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 HIPK4Q8NE63 616 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 TANKQ92844 425 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 TAAR1Q96RJ0 339 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 INO80BQ9C086 356 aaPredicted RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 KCNH7Q9NS40 1196 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 MYRFQ9Y2G1 1151 aa10.5□□□□□ -0.73
VPS39-214ENST00000614932 ZNF646O15015 1829 aaPredicted RBP10.5□□□□□ -0.73
VPS39-214ENST00000614932 C2orf71A6NGG8 1288 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 ZNF839A8K0R7 811 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 H3BMQ9 156 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 H3BNH8 94 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 NFKBIEO00221 500 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 TGFB1I1O43294 461 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 LRRN2O75325 713 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 CYP3A4P08684 503 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 XRCC5P13010 732 aaKnown RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 CPOXP36551 454 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 GMPSP49915 693 aaPredicted RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 MLLT6P55198 1093 aaPredicted RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 TAGLNQ01995 201 aaKnown RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 PRKCQQ04759 706 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 ANO4Q32M45 955 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 LYSMD3Q7Z3D4 306 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 AKAP14Q86UN6 197 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 KBTBD6Q86V97 674 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 ADCY4Q8NFM4 1077 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 PMEPA1Q969W9 287 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 LRGUKQ96M69 825 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 COG8Q96MW5 612 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 WRNIP1Q96S55 665 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 CDK5RAP1Q96SZ6 601 aaKnown RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 YME1L1Q96TA2 773 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 RMND5AQ9H871 391 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 GPRC5CQ9NQ84 441 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 PPARGC1AQ9UBK2 798 aaKnown RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 HACL1Q9UJ83 578 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 RIPK3Q9Y572 518 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 GOLGA8JA6NMD2 632 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 A8MX80 341 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 CAPN1P07384 714 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 POLR2BP30876 1174 aaKnown RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 GNL1P36915 607 aaPredicted RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 CDKL1Q00532 357 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 PPATQ06203 517 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 CYP1B1Q16678 543 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 FGD3Q5JSP0 725 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 C1orf186Q6ZWK4 172 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 NOP9Q86U38 636 aaKnown RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 FAM178BQ8IXR5 827 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 ZSWIM2Q8NEG5 633 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 AGBL3Q8NEM8 1001 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 HM13Q8TCT9 377 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 NLRP7Q8WX94 980 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 ALG3Q92685 438 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 DOK1Q99704 481 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 SLC29A1Q99808 456 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 C1orf50Q9BV19 199 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 TEKT3Q9BXF9 490 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 GCOM2Q9BZD3 368 aaPredicted RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 VPS11Q9H270 941 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 AVENQ9NQS1 362 aaPredicted RBP10.49□□□□□ -0.73
VPS39-214ENST00000614932 FEM1BQ9UK73 627 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 NENFQ9UMX5 172 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 PCDHB4Q9Y5E5 795 aa10.49□□□□□ -0.73
VPS39-214ENST00000614932 SF3B1O75533 1304 aaKnown RBP eCLIP10.49□□□□□ -0.73
VPS39-214ENST00000614932 C1orf232A0A0U1RR37 186 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 EXOC1LA0A1B0GW35 172 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 AREL1O15033 823 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SNAP91O60641 907 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ZC3H11AO75152 810 aaKnown RBP eCLIP10.48□□□□□ -0.73
VPS39-214ENST00000614932 COL6A1P12109 1028 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 ADRA1DP25100 572 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 HADHAP40939 763 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 EPHB1P54762 984 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 SOX10P56693 466 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 MAP3K7CLP57077 242 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 RPS6P62753 249 aaKnown RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 CAV1Q03135 178 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 COX10Q12887 443 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 KIAA1841Q6NSI8 718 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 AADACL2Q6P093 401 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 GALNT18Q6P9A2 607 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 OTOP3Q7RTS5 596 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 PRPF39Q86UA1 669 aaKnown RBP10.48□□□□□ -0.73
VPS39-214ENST00000614932 TDRPQ86YL5 185 aa10.48□□□□□ -0.73
VPS39-214ENST00000614932 TICAM1Q8IUC6 712 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms