RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 FAM72DQ6L9T8 149 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 FBXL22Q6P050 247 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 C14orf80Q86SX3 495 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 FAM72BQ86X60 149 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 TSC1Q92574 1164 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 RBM41Q96IZ5 413 aaKnown RBP14.83□□□□□ -0.04
UPF1-211ENST00000600868 RPGRIP1Q96KN7 1286 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 NAPGQ99747 312 aaPredicted RBP14.83□□□□□ -0.04
UPF1-211ENST00000600868 KXD1Q9BQD3 176 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 FAM83CQ9BQN1 747 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 ZNF670Q9BS34 389 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 PLA2G2FQ9BZM2 168 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 PPARGC1AQ9UBK2 798 aaKnown RBP14.83□□□□□ -0.04
UPF1-211ENST00000600868 NUMBLQ9Y6R0 609 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 XIRP2A4UGR9 3374 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 KIF26AQ9ULI4 1882 aaPredicted RBP14.82□□□□□ -0.04
UPF1-211ENST00000600868 LRRD1A4D1F6 860 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 DRGXA6NNA5 263 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 E9PAM4 449 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 H3BRJ5 948 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 ATP1A1P05023 1023 aaKnown RBP14.82□□□□□ -0.04
UPF1-211ENST00000600868 PSMC3P17980 439 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 IL4RP24394 825 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 HOXC13P31276 330 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 ARL4AP40617 200 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 COPS2P61201 443 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 PDGFRLQ15198 375 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 TAZQ16635 292 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 EML3Q32P44 896 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 PPP6R3Q5H9R7 873 aaPredicted RBP14.82□□□□□ -0.04
UPF1-211ENST00000600868 PAPD7Q5XG87 772 aaKnown RBP14.82□□□□□ -0.04
UPF1-211ENST00000600868 LRRC31Q6UY01 552 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 ADGRG2Q8IZP9 1017 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 LGI2Q8N0V4 545 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 CARD9Q9H257 536 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 LINC00597Q9H2U6 94 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 RETREG1Q9H6L5 497 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 KLHL11Q9NVR0 708 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 DUS2Q9NX74 493 aaKnown RBP14.82□□□□□ -0.04
UPF1-211ENST00000600868 CWC15Q9P013 229 aaKnown RBP14.82□□□□□ -0.04
UPF1-211ENST00000600868 IGSF9Q9P2J2 1179 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 PRKAG3Q9UGI9 489 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 DNAI1Q9UI46 699 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 VANGL2Q9ULK5 521 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 WNT6Q9Y6F9 365 aa14.82□□□□□ -0.04
UPF1-211ENST00000600868 SPTBN5Q9NRC6 3674 aaKnown RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 C5orf42Q9H799 3197 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 LOC730098B7Z3J9 87 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 PI4K2BG5E9Z4 385 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 EEF2KO00418 725 aaKnown RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 KCNK3O14649 394 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 FANCGO15287 622 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 CHADO15335 359 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 CREB3O43889 395 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 SRGAP2O75044 1071 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 CD48P09326 243 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 PYGMP11217 842 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 PRLRP16471 622 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 CASQ1P31415 396 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 PTPN7P35236 360 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 GGCXP38435 758 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 CDKN2BP42772 138 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 IFNAR2P48551 515 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 DNA2P51530 1060 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 TPI1P60174 286 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 PPP2R5EQ16537 467 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 RABGAP1LQ5R372 815 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 TTC39BQ5VTQ0 682 aaPredicted RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 DCAF12L1Q5VU92 463 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 RFWD3Q6PCD5 774 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 MFSD7Q6UXD7 560 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 SYT10Q6XYQ8 523 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 RFX8Q6ZV50 586 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 ADHFE1Q8IWW8 467 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 YAF2Q8IY57 180 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 HJURPQ8NCD3 748 aaPredicted RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 ST13P5Q8NFI4 369 aaPredicted RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 ATXN2LQ8WWM7 1075 aaKnown RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 IRF7Q92985 503 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 IGSF8Q969P0 613 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 RNF25Q96BH1 459 aaPredicted RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 FAF2Q96CS3 445 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 TBC1D31Q96DN5 1066 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 TMA16Q96EY4 203 aaKnown RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 ASIC4Q96FT7 647 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 CSPG4P5Q96PW8 444 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 RPP25Q9BUL9 199 aaKnown RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 TRMT61BQ9BVS5 477 aaKnown RBP14.81□□□□□ -0.04
UPF1-211ENST00000600868 CALN1Q9BXU9 219 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 LIMD1Q9UGP4 676 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 SNX12Q9UMY4 172 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 NEU3Q9UQ49 428 aa14.81□□□□□ -0.04
UPF1-211ENST00000600868 PRUNE2Q8WUY3 3088 aa14.8□□□□□ -0.04
UPF1-211ENST00000600868 CES2O00748 559 aa14.8□□□□□ -0.04
UPF1-211ENST00000600868 TRDMT1O14717 391 aaKnown RBP14.8□□□□□ -0.04
UPF1-211ENST00000600868 FGF10O15520 208 aaPredicted RBP14.8□□□□□ -0.04
UPF1-211ENST00000600868 NFATC1O95644 943 aa14.8□□□□□ -0.04
UPF1-211ENST00000600868 GOT1P17174 413 aa14.8□□□□□ -0.04
UPF1-211ENST00000600868 CETN2P41208 172 aa14.8□□□□□ -0.04
UPF1-211ENST00000600868 MMRN1Q13201 1228 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms