RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	CPQ	Q9Y646	472 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	GON4L	Q3T8J9	2241 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	TCRBV5S1A1T	A0A578	114 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	LNP1	A1A4G5	178 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	TMEM110-MUSTN1	A8MSY1	372 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	MTA2	O94776	668 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	LCP1	P13796	627 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	EIF2D	P41214	584 aa	Known RBP	13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	PLA2G4A	P47712	749 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	GABRB2	P47870	512 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	TCEAL1	Q15170	157 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	DHCR24	Q15392	516 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	CRY1	Q16526	586 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	HSF5	Q4G112	596 aa	Predicted RBP	13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	DAB2IP	Q5VWQ8	1189 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	OR6B2	Q6IFH4	312 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	PLEKHA7	Q6IQ23	1121 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	PSAPL1	Q6NUJ1	521 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	CYP2U1	Q7Z449	544 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	PIGZ	Q86VD9	579 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	DDX42	Q86XP3	938 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	CCDC33	Q8N5R6	958 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	C3orf20	Q8ND61	904 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	ZMIZ2	Q8NF64	920 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	MDGA1	Q8NFP4	955 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	PIWIL1	Q96J94	861 aa	Known RBP	13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	RNF38	Q9H0F5	515 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	METTL5	Q9NRN9	209 aa	Known RBP	13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	UVRAG	Q9P2Y5	699 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	ANAPC7	Q9UJX3	599 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	INVS	Q9Y283	1065 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	SCIN	Q9Y6U3	715 aa		13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	ASCC3	Q8N3C0	2202 aa	Known RBP	13.2	□□□□□ -0.3
UPF1-208	ENST00000600012	TNRC6B	Q9UPQ9	1833 aa	Known RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	C4orf47	A7E2U8	309 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	KHNYN	O15037	678 aa	Known RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	BUB1B	O60566	1050 aa	Predicted RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	ALDH1A2	O94788	518 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	FTCD	O95954	541 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	ADH1C	P00326	375 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	APOD	P05090	189 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	CASQ1	P31415	396 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	NOVA1	P51513	510 aa	Known RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	HADHB	P55084	474 aa	Known RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	GSC	P56915	257 aa	Predicted RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	SLC8A3	P57103	927 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	TAF10	Q12962	218 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	MAMLD1	Q13495	774 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	MESD	Q14696	234 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	IFI16	Q16666	785 aa	Known RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	FAM102A	Q5T9C2	384 aa	Predicted RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	GPRIN1	Q7Z2K8	1008 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	CPNE8	Q86YQ8	564 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	ADGRG2	Q8IZP9	1017 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	PDZD8	Q8NEN9	1154 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	TRIM58	Q8NG06	486 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	JOSD2	Q8TAC2	188 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	CLEC4C	Q8WTT0	213 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	STK32A	Q8WU08	396 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	MCEE	Q96PE7	176 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	KCNK16	Q96T55	309 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	PNKP	Q96T60	521 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	SELENOO	Q9BVL4	669 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	MIS12	Q9H081	205 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	DMAP1	Q9NPF5	467 aa	Predicted RBP	13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	SMPD4	Q9NXE4	827 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	CFAP97	Q9P2B7	532 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	WDR35	Q9P2L0	1181 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	TBC1D14	Q9P2M4	693 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	HYOU1	Q9Y4L1	999 aa		13.19	□□□□□ -0.3
UPF1-208	ENST00000600012	CEP295	Q9C0D2	2601 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	HHLA1	C9JL84	531 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	ENC1	O14682	589 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	PAPSS1	O43252	624 aa	Predicted RBP	13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	RTN3	O95197	1032 aa	Predicted RBP	13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	KAT7	O95251	611 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	MBL2	P11226	248 aa	Predicted RBP	13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	BCKDHB	P21953	392 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	RPL34	P49207	117 aa	Known RBP	13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	ADIG	Q0VDE8	80 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	PPP1R15B	Q5SWA1	713 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	OLFML1	Q6UWY5	402 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	DAAM2	Q86T65	1068 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	TMEM110	Q86TL2	294 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	NUP93	Q8N1F7	819 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	LRRC57	Q8N9N7	239 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	OVCA2	Q8WZ82	227 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	SPACA7	Q96KW9	195 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	HSFY1	Q96LI6	401 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	NAPG	Q99747	312 aa	Predicted RBP	13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	CSNK1G1	Q9HCP0	422 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	MRPL47	Q9HD33	250 aa	Known RBP	13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	POLM	Q9NP87	494 aa	Predicted RBP	13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	TMEM9B	Q9NQ34	198 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	PARVA	Q9NVD7	372 aa		13.18	□□□□□ -0.3
UPF1-208	ENST00000600012	CEP192	Q8TEP8	1941 aa		13.17	□□□□□ -0.3
UPF1-208	ENST00000600012	E2F8	A0AVK6	867 aa		13.17	□□□□□ -0.3
UPF1-208	ENST00000600012	CTAGE9	A4FU28	777 aa		13.17	□□□□□ -0.3
UPF1-208	ENST00000600012	ANTXRL	A6NF34	631 aa		13.17	□□□□□ -0.3

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