RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SEMA4FO95754 770 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 IGLV3-19P01714 112 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 ITPKBP27987 946 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 OXTRP30559 389 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 RGS7P49802 495 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 RPS14P62263 151 aaKnown RBP9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 ADIGQ0VDE8 80 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 LRMPQ12912 555 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 DNAJC3Q13217 504 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 CAMK2GQ13555 558 aaPredicted RBP9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 RAB41Q5JT25 222 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 MMS22LQ6ZRQ5 1243 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 ADIPOR2Q86V24 386 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 CPXM2Q8N436 756 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 FAM181AQ8N9Y4 354 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 PIP4K2CQ8TBX8 421 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 SLC6A18Q96N87 628 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 ORAI3Q9BRQ5 295 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 DCLK3Q9C098 648 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 EBF2Q9HAK2 575 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 PRSS16Q9NQE7 514 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 STIM2Q9P246 746 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 TSPAN16Q9UKR8 245 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 STRIP2Q9ULQ0 834 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 KNTC1P50748 2209 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 FLRT2O43155 660 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 ZBED1O96006 694 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 WNT1P04628 370 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 IGHV4-34P06331 123 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 KRT13P13646 458 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 LCP1P13796 627 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 SLC6A4P31645 630 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CTSOP43234 321 aaPredicted RBP9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CCR10P46092 362 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 PSEN1P49768 467 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CSRP3P50461 194 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 AFF3P51826 1226 aaKnown RBP9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 NDUFA8P51970 172 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 RIPPLY3P57055 190 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 ADAM9Q13443 819 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CAMK2BQ13554 666 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 EIF4HQ15056 248 aaKnown RBP9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 TRIP4Q15650 581 aaPredicted RBP9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CBWD6Q4V339 395 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CBWD3Q5JTY5 395 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CBWD5Q5RIA9 395 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 MBLAC2Q68D91 279 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 DBX2Q6ZNG2 339 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 INTS8Q75QN2 995 aaKnown RBP9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 TADA2BQ86TJ2 420 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 DHX40Q8IX18 779 aaKnown RBP9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 FAM217AQ8IXS0 508 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 GANCQ8TET4 914 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CLEC4CQ8WTT0 213 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 TMA16Q96EY4 203 aaKnown RBP9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 TMEM176AQ96HP8 235 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 TMEM245Q9H330 911 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 GOLPH3LQ9H4A5 285 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 TMEM8AQ9HCN3 771 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 GGA2Q9UJY4 613 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 RCOR1Q9UKL0 485 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 TRAF3IP3Q9Y228 551 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 ZNF510Q9Y2H8 683 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 DOCK9Q9BZ29 2069 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 CSMD1Q96PZ7 3565 aa9.01□□□□□ -0.97
SHKBP1-220ENST00000599716 TEX51A0A1B0GUA7 166 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 PYCARD-AS1I3L0S3 204 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 TBL1XO60907 577 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 SIN3BO75182 1162 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 DKK1O94907 266 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 DNTTP04053 509 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 ZNF883P0CG24 379 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 PABPC1P11940 636 aaKnown RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 CD19P15391 556 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 TRIM21P19474 475 aaKnown RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 PSMC2P35998 433 aaKnown RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 CTSKP43235 329 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 HARS2P49590 506 aaKnown RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 MXI1P50539 228 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 DPYDQ12882 1025 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 SHBQ15464 509 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 MPPE1Q53F39 396 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 DCAF17Q5H9S7 520 aaPredicted RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 TCERG1LQ5VWI1 586 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 BSPRYQ5W0U4 402 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 ARHGAP17Q68EM7 881 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 KRT39Q6A163 491 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 PM20D1Q6GTS8 502 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 NADSYN1Q6IA69 706 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 NCEH1Q6PIU2 408 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 IL27RAQ6UWB1 636 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 ADAT2Q7Z6V5 191 aaKnown RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 CFAP52Q8N1V2 620 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 ZNF276Q8N554 614 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 ANKRD52Q8NB46 1076 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 RNF139Q8WU17 664 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 TMEM174Q8WUU8 243 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 ERCC4Q92889 916 aaPredicted RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 PLD4Q96BZ4 506 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 MYO19Q96H55 970 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms