RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PIP4P1Q86T03 277 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 TAC4Q86UU9 113 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 CARNMT1Q8N4J0 409 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 ADAM32Q8TC27 787 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 WFDC5Q8TCV5 224 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 STK32AQ8WU08 396 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 FCRL2Q96LA5 508 aaPredicted RBP10.17□□□□□ -0.78
VRK3-216ENST00000599342 PRICKLE1Q96MT3 831 aaPredicted RBP10.17□□□□□ -0.78
VRK3-216ENST00000599342 MED15Q96RN5 788 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 ADAM33Q9BZ11 813 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 NUCKS1Q9H1E3 243 aaKnown RBP10.17□□□□□ -0.78
VRK3-216ENST00000599342 PCED1AQ9H1Q7 454 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 POPDC2Q9HBU9 364 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 TJP2Q9UDY2 1190 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 SUN2Q9UH99 717 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 RWDD2AQ9UIY3 292 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 CNTN6Q9UQ52 1028 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 NAALADL1Q9UQQ1 740 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 PCDHB9Q9Y5E1 797 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 SPTBN2O15020 2390 aa10.17□□□□□ -0.78
VRK3-216ENST00000599342 PCDH15Q96QU1 1955 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 SPAARA0A1B0GVQ0 90 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 E5RJQ4 531 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 MOCS3O95396 460 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 CER1O95813 267 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 ASLP04424 464 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 FYNP06241 537 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 PROS1P07225 676 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 SPINK2P20155 84 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 RPL34P49207 117 aaKnown RBP10.16□□□□□ -0.78
VRK3-216ENST00000599342 RPS24P62847 133 aaKnown RBP10.16□□□□□ -0.78
VRK3-216ENST00000599342 ZBTB16Q05516 673 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 CAMK4Q16566 473 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 TPD52L1Q16890 204 aaPredicted RBP10.16□□□□□ -0.78
VRK3-216ENST00000599342 ARHGAP44Q17R89 818 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 MS4A13Q5J8X5 152 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 ZNF776Q68DI1 518 aaPredicted RBP10.16□□□□□ -0.78
VRK3-216ENST00000599342 NADSYN1Q6IA69 706 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 IL27RAQ6UWB1 636 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 GBP6Q6ZN66 633 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 BEND5Q7L4P6 421 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 CHSY1Q86X52 802 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 FIBINQ8TAL6 211 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 ZNF606Q8WXB4 792 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 CRACR2AQ9BSW2 395 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 SCNM1Q9BWG6 230 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 BTBD1Q9H0C5 482 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 PRSS16Q9NQE7 514 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 KIAA1468Q9P260 1216 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 APEX2Q9UBZ4 518 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 EIF2B4Q9UI10 523 aaKnown RBP10.16□□□□□ -0.78
VRK3-216ENST00000599342 CEP83Q9Y592 693 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 CKAP5Q14008 2032 aa10.16□□□□□ -0.78
VRK3-216ENST00000599342 C1QTNF9BB2RNN3 333 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 F5H5T6 163 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 H0Y626 953 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 PAPSS1O43252 624 aaPredicted RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 HYAL3O43820 417 aaPredicted RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 RNASEH1O60930 286 aaKnown RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 LUC7L3O95232 432 aaKnown RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 TRIM16O95361 564 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 SEMA4FO95754 770 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 TRUB2O95900 331 aaKnown RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 C1QTNF9P0C862 333 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 CD59P13987 128 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 ACSL1P33121 698 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 CSKP41240 450 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 MATKP42679 507 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 MTIF2P46199 727 aaKnown RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 AFF3P51826 1226 aaKnown RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 RPS14P62263 151 aaKnown RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 YWHAZP63104 245 aaKnown RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 SFSWAPQ12872 951 aaKnown RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 PDCLQ13371 301 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 TEAD4Q15561 434 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 EXOC3L4Q17RC7 722 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 SYPL2Q5VXT5 272 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 RNF219Q5W0B1 726 aaPredicted RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 RAP1GAP2Q684P5 730 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 GJB7Q6PEY0 223 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 TMEM110Q86TL2 294 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 NAXDQ8IW45 347 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 LGI2Q8N0V4 545 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 CFAP52Q8N1V2 620 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 ATP6V0D2Q8N8Y2 350 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 GANCQ8TET4 914 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 SLC39A13Q96H72 371 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 BTN2A3PQ96KV6 586 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 NOX5Q96PH1 765 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 SLC4A5Q9BY07 1137 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 THAP9Q9H5L6 903 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 C6orf106Q9H6K1 298 aaPredicted RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 GAREM1Q9H706 876 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 FAM204AQ9H8W3 233 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 SGK2Q9HBY8 427 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 KIAA1522Q9P206 1035 aaPredicted RBP10.15□□□□□ -0.78
VRK3-216ENST00000599342 SLC12A6Q9UHW9 1150 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 SCML1Q9UN30 329 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 NCKAP1Q9Y2A7 1128 aa10.15□□□□□ -0.78
VRK3-216ENST00000599342 MUC22E2RYF6 1773 aaPredicted RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms