RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 CENPHQ9H3R5 247 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 SAYSD1Q9NPB0 183 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 GOLGA6AQ9NYA3 693 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 CXXC1Q9P0U4 656 aaPredicted RBP20.45■□□□□ 0.86
TRIM47-204ENST00000587339 INSL6Q9Y581 213 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 ZNF638Q14966 1978 aaKnown RBP20.45■□□□□ 0.86
TRIM47-204ENST00000587339 TCRBV7S3A2A0A539 114 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 TLR5O60602 858 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 TMEM63AO94886 807 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 APOEP02649 317 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 VAV1P15498 845 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 MAGEA4P43358 317 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 KRT71Q3SY84 523 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 TP53INP2Q8IXH6 220 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 PDZD8Q8NEN9 1154 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 P2RY11Q96G91 374 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 PKNOX2Q96KN3 472 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 C9orf72Q96LT7 481 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 ZNF512Q96ME7 567 aaPredicted RBP20.45■□□□□ 0.86
TRIM47-204ENST00000587339 CCSER2Q9H7U1 834 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 TMBIM4Q9HC24 238 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 NINJ2Q9NZG7 142 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 NR2E3Q9Y5X4 410 aa20.45■□□□□ 0.86
TRIM47-204ENST00000587339 GREB1Q4ZG55 1949 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 CHADO15335 359 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 STK10O94804 968 aaKnown RBP20.44■□□□□ 0.86
TRIM47-204ENST00000587339 CSH1P0DML2 217 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 CSH2P0DML3 217 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 GYS2P54840 703 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 ARL4CP56559 192 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 TRIP4Q15650 581 aaPredicted RBP20.44■□□□□ 0.86
TRIM47-204ENST00000587339 KCTD16Q68DU8 428 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 PSRC1Q6PGN9 363 aaPredicted RBP20.44■□□□□ 0.86
TRIM47-204ENST00000587339 C1orf74Q96LT6 269 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.44■□□□□ 0.86
TRIM47-204ENST00000587339 NEU3Q9UQ49 428 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 YIPF1Q9Y548 306 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 HS3ST4Q9Y661 456 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 PTPRSQ13332 1948 aa20.44■□□□□ 0.86
TRIM47-204ENST00000587339 PRRG1O14668 218 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 FGF10O15520 208 aaPredicted RBP20.43■□□□□ 0.86
TRIM47-204ENST00000587339 MX2P20592 715 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 HOXC13P31276 330 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 ELF1P32519 619 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 MLLT6P55198 1093 aaPredicted RBP20.43■□□□□ 0.86
TRIM47-204ENST00000587339 GAD2Q05329 585 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 PDIA2Q13087 525 aaKnown RBP20.43■□□□□ 0.86
TRIM47-204ENST00000587339 KCNJ11Q14654 390 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 TMEM240Q5SV17 173 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 MANEALQ5VSG8 457 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 ARHGEF18Q6ZSZ5 1173 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 GPR65Q8IYL9 337 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 ZBED8Q8IZ13 594 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 C7orf61Q8IZ16 206 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 OVCA2Q8WZ82 227 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 TBC1D31Q96DN5 1066 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 ATP6V1G3Q96LB4 118 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 CDK5RAP1Q96SZ6 601 aaKnown RBP20.43■□□□□ 0.86
TRIM47-204ENST00000587339 PHACTR1Q9C0D0 580 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 CATSPERBQ9H7T0 1116 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 SLC12A6Q9UHW9 1150 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 A0A0A0MRY4 1105 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 ZNF189O75820 626 aaPredicted RBP20.43■□□□□ 0.86
TRIM47-204ENST00000587339 LINC00271P0C7V0 271 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 NRG1Q02297 640 aaPredicted RBP20.43■□□□□ 0.86
TRIM47-204ENST00000587339 TAF12Q16514 161 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 PDIK1LQ8N165 341 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 ATP6V0D2Q8N8Y2 350 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 SPATA13Q96N96 652 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 BRD8Q9H0E9 1235 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 ETNK1Q9HBU6 452 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 FNIP2Q9P278 1114 aa20.43■□□□□ 0.86
TRIM47-204ENST00000587339 LAMA2P24043 3122 aaKnown RBP20.42■□□□□ 0.86
TRIM47-204ENST00000587339 SLC12A8A0AV02 714 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 E9PAM4 449 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 RNF103O00237 685 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 ALOX15BO15296 676 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 TEX28O15482 410 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 APRTP07741 180 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 HMGA1P17096 107 aaKnown RBP20.42■□□□□ 0.86
TRIM47-204ENST00000587339 CA8P35219 290 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 TUBP50607 506 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 CREMQ03060 361 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 FASTKD3Q14CZ7 662 aaKnown RBP20.42■□□□□ 0.86
TRIM47-204ENST00000587339 VEPH1Q14D04 833 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 ANKRD20A2Q5SQ80 823 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 SYCP2LQ5T4T6 812 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 FAXCQ5TGI0 409 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 ANKRD20A1Q5TYW2 823 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 PIK3R6Q5UE93 754 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 ANKRD20A3Q5VUR7 823 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 PPP1R21Q6ZMI0 780 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 CLP1Q92989 425 aaKnown RBP20.42■□□□□ 0.86
TRIM47-204ENST00000587339 BTN2A3PQ96KV6 586 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 TTC25Q96NG3 672 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 SEPT10Q9P0V9 454 aa20.42■□□□□ 0.86
TRIM47-204ENST00000587339 HMGB1P1B2RPK0 211 aaPredicted RBP20.41■□□□□ 0.86
TRIM47-204ENST00000587339 OPHN1O60890 802 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 METTL18O95568 372 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 KPNA1P52294 538 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms