RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 COX16Q9P0S2 106 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 BCCIPQ9P287 314 aaKnown RBP eCLIP13.88□□□□□ -0.19
CLK3-216ENST00000564468 DOCK4Q8N1I0 1966 aa13.88□□□□□ -0.19
CLK3-216ENST00000564468 F5H5T6 163 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 ADAM23O75077 832 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 KRT37O76014 449 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 CALB1P05937 261 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 ATP5BP06576 529 aaKnown RBP13.87□□□□□ -0.19
CLK3-216ENST00000564468 CHRNB2P17787 502 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 TACR2P21452 398 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 SULT1E1P49888 294 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 UBASH3AP57075 661 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 PITX1P78337 314 aaPredicted RBP13.87□□□□□ -0.19
CLK3-216ENST00000564468 FANCCQ00597 558 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 STARD3Q14849 445 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 NR1I3Q14994 352 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 SLC25A52Q3SY17 297 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 RABGAP1LQ5R372 815 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 TTC39BQ5VTQ0 682 aaPredicted RBP13.87□□□□□ -0.19
CLK3-216ENST00000564468 RNF43Q68DV7 783 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 NADSYN1Q6IA69 706 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 MFN1Q8IWA4 741 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 PGBD3Q8N328 593 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.87□□□□□ -0.19
CLK3-216ENST00000564468 FIBINQ8TAL6 211 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 IQCDQ96DY2 449 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 PGAP3Q96FM1 320 aaPredicted RBP13.87□□□□□ -0.19
CLK3-216ENST00000564468 LOXL4Q96JB6 756 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 NAP1L5Q96NT1 182 aaPredicted RBP13.87□□□□□ -0.19
CLK3-216ENST00000564468 PPP1R9BQ96SB3 815 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 NPY6RQ99463 290 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 AGPAT1Q99943 283 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 CIPCQ9C0C6 399 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 NUCKS1Q9H1E3 243 aaKnown RBP13.87□□□□□ -0.19
CLK3-216ENST00000564468 WDCPQ9H6R7 721 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 SEPT11Q9NVA2 429 aaKnown RBP13.87□□□□□ -0.19
CLK3-216ENST00000564468 STIM2Q9P246 746 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 THAP10Q9P2Z0 257 aaPredicted RBP13.87□□□□□ -0.19
CLK3-216ENST00000564468 GGA2Q9UJY4 613 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 CLEC4EQ9ULY5 219 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 PLA2G4CQ9UP65 541 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 CACNA1GO43497 2377 aa13.87□□□□□ -0.19
CLK3-216ENST00000564468 TCRBV21S2A2A0A5A6 115 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 ANTXRLA6NF34 631 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 H0Y626 953 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 GOLGA8SH3BPF8 625 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 LRP3O75074 770 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 RHOBTB1O94844 696 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 MOCS3O95396 460 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 TPM3P06753 285 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 RETP07949 1114 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 PABPC1P11940 636 aaKnown RBP13.86□□□□□ -0.19
CLK3-216ENST00000564468 UNGP13051 313 aaPredicted RBP13.86□□□□□ -0.19
CLK3-216ENST00000564468 TNFAIP3P21580 790 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 HLA-FP30511 346 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 PI4KAP42356 2102 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 WASP42768 502 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 OXCT1P55809 520 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 CENPCQ03188 943 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 DEUP1Q05D60 604 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 SRSF5Q13243 272 aaKnown RBP13.86□□□□□ -0.19
CLK3-216ENST00000564468 CDH18Q13634 790 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 ELF2Q15723 593 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 CLEC16AQ2KHT3 1053 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 FIGNQ5HY92 759 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 RAP1GAP2Q684P5 730 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 MMS22LQ6ZRQ5 1243 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 CHST9Q7L1S5 443 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 KIAA0907Q7Z7F0 614 aaPredicted RBP13.86□□□□□ -0.19
CLK3-216ENST00000564468 LGI2Q8N0V4 545 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 CARNMT1Q8N4J0 409 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 MDGA1Q8NFP4 955 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 NT5C3BQ969T7 300 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 P2RY11Q96G91 374 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 ZC3H10Q96K80 434 aaKnown RBP13.86□□□□□ -0.19
CLK3-216ENST00000564468 SPACA7Q96KW9 195 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 ZDHHC4Q9NPG8 344 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 ABCB8Q9NUT2 735 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 ADAM22Q9P0K1 906 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 KIAA1522Q9P206 1035 aaPredicted RBP13.86□□□□□ -0.19
CLK3-216ENST00000564468 HCN2Q9UL51 889 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 USP18Q9UMW8 372 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 STON1Q9Y6Q2 735 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 GON4LQ3T8J9 2241 aa13.86□□□□□ -0.19
CLK3-216ENST00000564468 KMT2BQ9UMN6 2715 aaPredicted RBP13.85□□□□□ -0.19
CLK3-216ENST00000564468 SYNCRIPO60506 623 aaKnown RBP13.85□□□□□ -0.19
CLK3-216ENST00000564468 LUC7L3O95232 432 aaKnown RBP13.85□□□□□ -0.19
CLK3-216ENST00000564468 POLR2EP19388 210 aaKnown RBP13.85□□□□□ -0.19
CLK3-216ENST00000564468 HOXC13P31276 330 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 CXCR3P49682 368 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 SGSHP51688 502 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 GSCP56915 257 aaPredicted RBP13.85□□□□□ -0.19
CLK3-216ENST00000564468 RPS24P62847 133 aaKnown RBP13.85□□□□□ -0.19
CLK3-216ENST00000564468 SLC12A1Q13621 1099 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 ENPP2Q13822 863 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 ZNF234Q14588 700 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 ASIC2Q16515 512 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 SFMBT2Q5VUG0 894 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 IRF2BP2Q7Z5L9 587 aa13.85□□□□□ -0.19
CLK3-216ENST00000564468 PHF13Q86YI8 300 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms