RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CIPCQ9C0C6 399 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 NUCKS1Q9H1E3 243 aaKnown RBP13.87□□□□□ -0.19
CLK3-213ENST00000563842 WDCPQ9H6R7 721 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 SEPT11Q9NVA2 429 aaKnown RBP13.87□□□□□ -0.19
CLK3-213ENST00000563842 STIM2Q9P246 746 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 THAP10Q9P2Z0 257 aaPredicted RBP13.87□□□□□ -0.19
CLK3-213ENST00000563842 GGA2Q9UJY4 613 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 CLEC4EQ9ULY5 219 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 PLA2G4CQ9UP65 541 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 GVINP1Q7Z2Y8 2422 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 GPR179Q6PRD1 2367 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 TCRBV21S2A2A0A5A6 115 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 ANTXRLA6NF34 631 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 H0Y626 953 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 GOLGA8SH3BPF8 625 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 LRP3O75074 770 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 RHOBTB1O94844 696 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 MOCS3O95396 460 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 TPM3P06753 285 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 RETP07949 1114 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 PABPC1P11940 636 aaKnown RBP13.86□□□□□ -0.19
CLK3-213ENST00000563842 UNGP13051 313 aaPredicted RBP13.86□□□□□ -0.19
CLK3-213ENST00000563842 TNFAIP3P21580 790 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 HLA-FP30511 346 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 PI4KAP42356 2102 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 WASP42768 502 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 OXCT1P55809 520 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 CENPCQ03188 943 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 DEUP1Q05D60 604 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 SRSF5Q13243 272 aaKnown RBP13.86□□□□□ -0.19
CLK3-213ENST00000563842 CDH18Q13634 790 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 ELF2Q15723 593 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 CLEC16AQ2KHT3 1053 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 FIGNQ5HY92 759 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 RAP1GAP2Q684P5 730 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 MMS22LQ6ZRQ5 1243 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 CHST9Q7L1S5 443 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 KIAA0907Q7Z7F0 614 aaPredicted RBP13.86□□□□□ -0.19
CLK3-213ENST00000563842 LGI2Q8N0V4 545 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 CARNMT1Q8N4J0 409 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 MDGA1Q8NFP4 955 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 NT5C3BQ969T7 300 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 P2RY11Q96G91 374 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 ZC3H10Q96K80 434 aaKnown RBP13.86□□□□□ -0.19
CLK3-213ENST00000563842 SPACA7Q96KW9 195 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 ZDHHC4Q9NPG8 344 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 ABCB8Q9NUT2 735 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 ADAM22Q9P0K1 906 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 KIAA1522Q9P206 1035 aaPredicted RBP13.86□□□□□ -0.19
CLK3-213ENST00000563842 HCN2Q9UL51 889 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 STON1Q9Y6Q2 735 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 GON4LQ3T8J9 2241 aa13.86□□□□□ -0.19
CLK3-213ENST00000563842 SYNCRIPO60506 623 aaKnown RBP13.85□□□□□ -0.19
CLK3-213ENST00000563842 LUC7L3O95232 432 aaKnown RBP13.85□□□□□ -0.19
CLK3-213ENST00000563842 POLR2EP19388 210 aaKnown RBP13.85□□□□□ -0.19
CLK3-213ENST00000563842 HOXC13P31276 330 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 CXCR3P49682 368 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 SGSHP51688 502 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 GSCP56915 257 aaPredicted RBP13.85□□□□□ -0.19
CLK3-213ENST00000563842 RPS24P62847 133 aaKnown RBP13.85□□□□□ -0.19
CLK3-213ENST00000563842 SLC12A1Q13621 1099 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 ENPP2Q13822 863 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 ZNF234Q14588 700 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 ASIC2Q16515 512 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 SFMBT2Q5VUG0 894 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 IRF2BP2Q7Z5L9 587 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 PHF13Q86YI8 300 aaPredicted RBP13.85□□□□□ -0.19
CLK3-213ENST00000563842 SLC30A5Q8TAD4 765 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 HMGB4Q8WW32 186 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 BAP1Q92560 729 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 PRICKLE1Q96MT3 831 aaPredicted RBP13.85□□□□□ -0.19
CLK3-213ENST00000563842 ACOX2Q99424 681 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 C11orf70Q9BRQ4 267 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 TPSD1Q9BZJ3 242 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 CACNA2D2Q9NY47 1150 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 AIPL1Q9NZN9 384 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 TMEM59LQ9UK28 342 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 DMDP11532 3685 aa13.85□□□□□ -0.19
CLK3-213ENST00000563842 ZNF292O60281 2723 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 A0A1B0GVM2 712 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 A0A1W2PQF6 199 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 ANKRD62A6NC57 917 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 TCAF2A6NFQ2 919 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 LRRC53A6NM62 1247 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 FOXD2O60548 495 aaPredicted RBP13.84□□□□□ -0.19
CLK3-213ENST00000563842 ZNF217O75362 1048 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 ASLP04424 464 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 DLDP09622 509 aaKnown RBP13.84□□□□□ -0.19
CLK3-213ENST00000563842 KRT3P12035 628 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 DESP17661 470 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 SDC4P31431 198 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 RDXP35241 583 aaKnown RBP13.84□□□□□ -0.19
CLK3-213ENST00000563842 C1QBPQ07021 282 aaKnown RBP13.84□□□□□ -0.19
CLK3-213ENST00000563842 LPAL2Q16609 132 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 C2CD6Q53TS8 623 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 MBLAC2Q68D91 279 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 ACAD10Q6JQN1 1059 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 SERPINA13PQ6UXR4 307 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 CFAP52Q8N1V2 620 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 FAM160A2Q8N612 972 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms