RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 AHI1Q8N157 1196 aa16.37■□□□□ 0.21
CLK3-211ENST00000563297 CHCHD4Q8N4Q1 142 aa16.37■□□□□ 0.21
CLK3-211ENST00000563297 LMLNQ96KR4 655 aa16.37■□□□□ 0.21
CLK3-211ENST00000563297 KREMEN1Q96MU8 473 aa16.37■□□□□ 0.21
CLK3-211ENST00000563297 MIS12Q9H081 205 aa16.37■□□□□ 0.21
CLK3-211ENST00000563297 PRSS16Q9NQE7 514 aa16.37■□□□□ 0.21
CLK3-211ENST00000563297 FAM221BA6H8Z2 402 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 TMEM8BA6NDV4 472 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 IRAK2O43187 625 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 ATP5BP06576 529 aaKnown RBP16.36■□□□□ 0.21
CLK3-211ENST00000563297 POLR2EP19388 210 aaKnown RBP16.36■□□□□ 0.21
CLK3-211ENST00000563297 RDXP35241 583 aaKnown RBP16.36■□□□□ 0.21
CLK3-211ENST00000563297 GPD2P43304 727 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 GCNT1Q02742 428 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 MORC3Q14149 939 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 NAXDQ8IW45 347 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 FIBINQ8TAL6 211 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 GOLGA1Q92805 767 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 MYEOVQ96EZ4 313 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 PCED1AQ9H1Q7 454 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 LHX5Q9H2C1 402 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 IL21RQ9HBE5 538 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 STIM2Q9P246 746 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 SUN2Q9UH99 717 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 CNTN6Q9UQ52 1028 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 PCDHB9Q9Y5E1 797 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 ZZEF1O43149 2961 aa16.36■□□□□ 0.21
CLK3-211ENST00000563297 BICDL2A1A5D9 508 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 BIN1O00499 593 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 MARSP56192 900 aaKnown RBP16.35■□□□□ 0.21
CLK3-211ENST00000563297 STX17P56962 302 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 RPS14P62263 151 aaKnown RBP16.35■□□□□ 0.21
CLK3-211ENST00000563297 ZNF423Q2M1K9 1284 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 RAB44Q7Z6P3 723 aaPredicted RBP16.35■□□□□ 0.21
CLK3-211ENST00000563297 DQX1Q8TE96 717 aaKnown RBP16.35■□□□□ 0.21
CLK3-211ENST00000563297 TTC17Q96AE7 1141 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 SLC39A13Q96H72 371 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 FCRL2Q96LA5 508 aaPredicted RBP16.35■□□□□ 0.21
CLK3-211ENST00000563297 C6orf106Q9H6K1 298 aaPredicted RBP16.35■□□□□ 0.21
CLK3-211ENST00000563297 GAREM1Q9H706 876 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 FBRSQ9HAH7 460 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 CTNND2Q9UQB3 1225 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 NAALADL1Q9UQQ1 740 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 SLCO1B1Q9Y6L6 691 aa16.35■□□□□ 0.21
CLK3-211ENST00000563297 MUC22E2RYF6 1773 aaPredicted RBP16.35■□□□□ 0.21
CLK3-211ENST00000563297 SPEGQ15772 3267 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 CBFA2T3O75081 653 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 GNA14O95837 355 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 CSNK1EP49674 416 aaKnown RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 RPS24P62847 133 aaKnown RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 ZBTB16Q05516 673 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 SYPL2Q5VXT5 272 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 DBX2Q6ZNG2 339 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 MFN1Q8IWA4 741 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 ZNF557Q8N988 423 aaPredicted RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 MYO19Q96H55 970 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 PRICKLE1Q96MT3 831 aaPredicted RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 DDX50Q9BQ39 737 aaKnown RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 SRRTQ9BXP5 876 aaKnown RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 SLC4A5Q9BY07 1137 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 MTG2Q9H4K7 406 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 UBE2TQ9NPD8 197 aaPredicted RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 RALYQ9UKM9 306 aaKnown RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 INTS6Q9UL03 887 aaKnown RBP16.34■□□□□ 0.21
CLK3-211ENST00000563297 TLR6Q9Y2C9 796 aa16.34■□□□□ 0.21
CLK3-211ENST00000563297 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.34■□□□□ 0.21
CLK3-211ENST00000563297 DMXL2Q8TDJ6 3036 aa16.33■□□□□ 0.21
CLK3-211ENST00000563297 A0A1B0GVT2 93 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 GADD45BO75293 160 aaPredicted RBP16.33■□□□□ 0.2
CLK3-211ENST00000563297 AFPP02771 609 aaKnown RBP16.33■□□□□ 0.2
CLK3-211ENST00000563297 DNTTP04053 509 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 ZNF883P0CG24 379 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 KRT5P13647 590 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 MATKP42679 507 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 ACADSBP45954 432 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 NNTQ13423 1086 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 HLA-BQ31612 363 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 FSCBQ5H9T9 825 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 MS4A13Q5J8X5 152 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 DENND1BQ6P3S1 775 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 IL27RAQ6UWB1 636 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 BEND5Q7L4P6 421 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 PNPLA1Q8N8W4 532 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 HJURPQ8NCD3 748 aaPredicted RBP16.33■□□□□ 0.2
CLK3-211ENST00000563297 ADAM32Q8TC27 787 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 STK32AQ8WU08 396 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 ZNF606Q8WXB4 792 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 ADAMTS14Q8WXS8 1223 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 FAM149B1Q96BN6 582 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 SERPINB11Q96P15 392 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 BTBD1Q9H0C5 482 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 INTS2Q9H0H0 1204 aaKnown RBP16.33■□□□□ 0.2
CLK3-211ENST00000563297 NUCKS1Q9H1E3 243 aaKnown RBP16.33■□□□□ 0.2
CLK3-211ENST00000563297 ST7Q9NRC1 585 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 TM7SF3Q9NS93 570 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 PCOLCE2Q9UKZ9 415 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.33■□□□□ 0.2
CLK3-211ENST00000563297 FAM208BQ5VWN6 2430 aa16.33■□□□□ 0.2
CLK3-211ENST00000563297 SRRM3A6NNA2 597 aaPredicted RBP16.32■□□□□ 0.2
CLK3-211ENST00000563297 SART1O43290 800 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms