RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CEP76Q8TAP6 659 aa17.47■□□□□ 0.39
CLK3-210ENST00000563112 RNF34Q969K3 372 aa17.47■□□□□ 0.39
CLK3-210ENST00000563112 BTN2A3PQ96KV6 586 aa17.47■□□□□ 0.39
CLK3-210ENST00000563112 TMEM9BQ9NQ34 198 aa17.47■□□□□ 0.39
CLK3-210ENST00000563112 ITM2CQ9NQX7 267 aa17.47■□□□□ 0.39
CLK3-210ENST00000563112 TJP2Q9UDY2 1190 aa17.47■□□□□ 0.39
CLK3-210ENST00000563112 AJAP1Q9UKB5 411 aaPredicted RBP17.47■□□□□ 0.39
CLK3-210ENST00000563112 C4orf47A7E2U8 309 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 DLDP09622 509 aaKnown RBP17.46■□□□□ 0.39
CLK3-210ENST00000563112 PRKCHP24723 683 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 CD6P30203 668 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 OXTRP30559 389 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 CD70P32970 193 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 PI4KAP42356 2102 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 IRX4P78413 519 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 KCNMA1Q12791 1236 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 CDH18Q13634 790 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 TAF5Q15542 800 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 DUOXA1Q1HG43 343 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 SYCP2LQ5T4T6 812 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 KLHDC7AQ5VTJ3 777 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 SASS6Q6UVJ0 657 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 ADIPOR2Q86V24 386 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 CHSY1Q86X52 802 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 CYB5D2Q8WUJ1 264 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 FOXJ1Q92949 421 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 LSM14BQ9BX40 385 aaKnown RBP17.46■□□□□ 0.39
CLK3-210ENST00000563112 MKRN2Q9H000 416 aaKnown RBP17.46■□□□□ 0.39
CLK3-210ENST00000563112 NUCKS1Q9H1E3 243 aaKnown RBP17.46■□□□□ 0.39
CLK3-210ENST00000563112 TMEM74BQ9NUR3 256 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 SUN2Q9UH99 717 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 PILRBQ9UKJ0 227 aa17.46■□□□□ 0.39
CLK3-210ENST00000563112 H0Y626 953 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 MOCS3O95396 460 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 IGLV3-25P01717 112 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 CFIP05156 583 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 PNMA6AP0CW24 399 aaPredicted RBP17.45■□□□□ 0.38
CLK3-210ENST00000563112 HLA-EP13747 358 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 ABCB4P21439 1286 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 TACR2P21452 398 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 ST8SIA6P61647 398 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 RPS24P62847 133 aaKnown RBP17.45■□□□□ 0.38
CLK3-210ENST00000563112 MTA1Q13330 715 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 WDR45BQ5MNZ6 344 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 ZDHHC17Q8IUH5 632 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 RGL4Q8IZJ4 473 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 LGI2Q8N0V4 545 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 TMEM35BQ8NCS4 154 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 OR2T3Q8NH03 318 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 GPT2Q8TD30 523 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 ZNF419Q96HQ0 510 aaPredicted RBP17.45■□□□□ 0.38
CLK3-210ENST00000563112 HSPA12BQ96MM6 686 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 PRICKLE1Q96MT3 831 aaPredicted RBP17.45■□□□□ 0.38
CLK3-210ENST00000563112 SLC2A13Q96QE2 648 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 FBRSQ9HAH7 460 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 DDIT4Q9NX09 232 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 TAB2Q9NYJ8 693 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 SLC6A14Q9UN76 642 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 FHOD1Q9Y613 1164 aa17.45■□□□□ 0.38
CLK3-210ENST00000563112 ATXN2Q99700 1313 aaKnown RBP17.45■□□□□ 0.38
CLK3-210ENST00000563112 CKAP5Q14008 2032 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 SYNJ2BP-COX16A0A087WUM0 186 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 KCNU1A8MYU2 1149 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 F5H5T6 163 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 TM4SF5O14894 197 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 GRAP2O75791 330 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 ASLP04424 464 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 UCHL3P15374 230 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 CYP11B1P15538 503 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 CCR1P32246 355 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 COPAP53621 1224 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 SLC6A3Q01959 620 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 CAMK2GQ13555 558 aaPredicted RBP17.44■□□□□ 0.38
CLK3-210ENST00000563112 FKBP15Q5T1M5 1219 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 PEAR1Q5VY43 1037 aaPredicted RBP17.44■□□□□ 0.38
CLK3-210ENST00000563112 RAP1GAP2Q684P5 730 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 DPY19L2P1Q6NXN4 242 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 SLC23A3Q6PIS1 610 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 RBM43Q6ZSC3 357 aaKnown RBP17.44■□□□□ 0.38
CLK3-210ENST00000563112 FAM183BPQ6ZVS7 135 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 CFAP52Q8N1V2 620 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 ANKRD20A12PQ8NF67 263 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 WFDC5Q8TCV5 224 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 TTC17Q96AE7 1141 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 TOE1Q96GM8 510 aaKnown RBP17.44■□□□□ 0.38
CLK3-210ENST00000563112 STK33Q9BYT3 514 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 VPS16Q9H269 839 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 TMEM245Q9H330 911 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 PLCB1Q9NQ66 1216 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 ANO10Q9NW15 660 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 WSB2Q9NYS7 404 aaPredicted RBP17.44■□□□□ 0.38
CLK3-210ENST00000563112 COX16Q9P0S2 106 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 KIAA1522Q9P206 1035 aaPredicted RBP17.44■□□□□ 0.38
CLK3-210ENST00000563112 USP36Q9P275 1121 aaKnown RBP17.44■□□□□ 0.38
CLK3-210ENST00000563112 SUSD2Q9UGT4 822 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 TNRC6BQ9UPQ9 1833 aaKnown RBP17.44■□□□□ 0.38
CLK3-210ENST00000563112 LAMA1P25391 3075 aa17.44■□□□□ 0.38
CLK3-210ENST00000563112 LUC7L3O95232 432 aaKnown RBP17.43■□□□□ 0.38
CLK3-210ENST00000563112 ERBB2P04626 1255 aa17.43■□□□□ 0.38
CLK3-210ENST00000563112 SERPINF2P08697 491 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms