RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, human

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERC1-215	ENST00000561436	CFAP65	Q6ZU64	1925 aa	Known RBP	4.24	□□□□□ -1.73
HERC1-215	ENST00000561436	KIF24	Q5T7B8	1368 aa		4.24	□□□□□ -1.73
HERC1-215	ENST00000561436	KTN1	Q86UP2	1357 aa	Known RBP	4.24	□□□□□ -1.73
HERC1-215	ENST00000561436	USP47	Q96K76	1375 aa		4.24	□□□□□ -1.73
HERC1-215	ENST00000561436	MARF1	Q9Y4F3	1742 aa	Known RBP	4.24	□□□□□ -1.73
HERC1-215	ENST00000561436	MAP3K19	Q56UN5	1328 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	NRK	Q7Z2Y5	1582 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	KIF1B	O60333	1816 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	MYO5B	Q9ULV0	1848 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	RGPD3	A6NKT7	1758 aa	Predicted RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	RGPD4	Q7Z3J3	1758 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	ZAR1L	A6NP61	321 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	ADM5	C9JUS6	153 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	PCDH17	O14917	1159 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	MPPED1	O15442	326 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	URI1	O94763	535 aa	Predicted RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	RHOBTB3	O94955	611 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	WDR47	O94967	919 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	TTLL1	O95922	423 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	FES	P07332	822 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	ANXA6	P08133	673 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	AR	P10275	920 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	ZFX	P17010	805 aa	Predicted RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	NDUFB7	P17568	137 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	FOLR3	P41439	243 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	MAPK9	P45984	424 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	PAPOLA	P51003	745 aa	Known RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	PRELP	P51888	382 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	SP2	Q02086	613 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	CBFB	Q13951	182 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	ZNF169	Q14929	603 aa	Predicted RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	TBC1D25	Q3MII6	688 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	KAZN	Q674X7	775 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	CCDC70	Q6NSX1	233 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	MTHFD1L	Q6UB35	978 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	ZNF551	Q7Z340	670 aa	Predicted RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	PEG10	Q86TG7	708 aa	Known RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	SLC44A2	Q8IWA5	706 aa	Predicted RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	SIRT6	Q8N6T7	355 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	SUN3	Q8TAQ9	357 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	OTUD7A	Q8TE49	926 aa	Predicted RBP	4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	OVCA2	Q8WZ82	227 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	CPT1B	Q92523	772 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	BRD8	Q9H0E9	1235 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	EPS8L2	Q9H6S3	715 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	SNX15	Q9NRS6	342 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	RIMKLB	Q9ULI2	386 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	PCDHGB3	Q9Y5G1	929 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	COL15A1	P39059	1388 aa		4.23	□□□□□ -1.73
HERC1-215	ENST00000561436	ADGRA2	Q96PE1	1338 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	TNS1	Q9HBL0	1735 aa	Known RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436		A8MVJ9	347 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	QSOX1	O00391	747 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	DNPH1	O43598	174 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	TMPRSS11D	O60235	418 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	SH3BP5	O60239	455 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	ERBB2	P04626	1255 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	IL6R	P08887	468 aa	Predicted RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	CREB1	P16220	341 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	ZNF37A	P17032	561 aa	Predicted RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	DRD1	P21728	446 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	MMP8	P22894	467 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	AARS	P49588	968 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	MCM2	P49736	904 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	CLCN2	P51788	898 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	TXNL4A	P83876	142 aa	Known RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	RPS6KA2	Q15349	733 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	ZNF569	Q5MCW4	686 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	TMEM63B	Q5T3F8	832 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	FBXO42	Q6P3S6	717 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	NFRKB	Q6P4R8	1299 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	MAVS	Q7Z434	540 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	WDR53	Q7Z5U6	358 aa	Predicted RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	ADGRG3	Q86Y34	549 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	C11orf44	Q8N8P7	122 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	RP9	Q8TA86	221 aa	Known RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	PNISR	Q8TF01	805 aa	Known RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	NTN5	Q8WTR8	489 aa	Predicted RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	THAP4	Q8WY91	577 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	SLC9A6	Q92581	669 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	C3orf49	Q96BT1	292 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	COG3	Q96JB2	828 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	BBC3	Q96PG8	261 aa	Predicted RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	KLK15	Q9H2R5	256 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	ELAC1	Q9H777	363 aa	Known RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	AS3MT	Q9HBK9	375 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	ARHGEF3	Q9NR81	526 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	FBXO28	Q9NVF7	368 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	DKK3	Q9UBP4	350 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	TLK1	Q9UKI8	766 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	C19orf53	Q9UNZ5	99 aa	Predicted RBP	4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	RTL1	A6NKG5	1358 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	RREB1	Q92766	1687 aa		4.22	□□□□□ -1.73
HERC1-215	ENST00000561436	PCDH11X	Q9BZA7	1347 aa		4.21	□□□□□ -1.73
HERC1-215	ENST00000561436	PCDH11Y	Q9BZA8	1340 aa		4.21	□□□□□ -1.73
HERC1-215	ENST00000561436	EDC4	Q6P2E9	1401 aa	Known RBP	4.21	□□□□□ -1.73
HERC1-215	ENST00000561436	C10orf71	Q711Q0	1435 aa		4.21	□□□□□ -1.73
HERC1-215	ENST00000561436	LRRC3C	A6NJW4	275 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	IPO5	O00410	1097 aa	Known RBP	4.21	□□□□□ -1.74

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