RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 SEMA5AQ13591 1074 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 MSS51Q4VC12 460 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 VPS52Q8N1B4 723 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 NPWQ8N729 165 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 LRRN4Q8WUT4 740 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 C1orf74Q96LT6 269 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 CCDC77Q9BR77 488 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 WDR83Q9BRX9 315 aaKnown RBP13.3□□□□□ -0.28
SNX1-211ENST00000560829 HERC2P3Q9BVR0 1158 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 STMN4Q9H169 189 aaPredicted RBP13.3□□□□□ -0.28
SNX1-211ENST00000560829 ETNK1Q9HBU6 452 aa13.3□□□□□ -0.28
SNX1-211ENST00000560829 TLR8Q9NR97 1041 aaKnown RBP13.3□□□□□ -0.28
SNX1-211ENST00000560829 AFF4Q9UHB7 1163 aaKnown RBP13.3□□□□□ -0.28
SNX1-211ENST00000560829 TLDC2A0PJX2 215 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 FGF10O15520 208 aaPredicted RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 STK10O94804 968 aaKnown RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 RAG1P15918 1043 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 ATF6P18850 670 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 OR1D2P34982 312 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 FDFT1P37268 417 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 MAGOHP61326 146 aaKnown RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 ZNF33AQ06730 810 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 TAF10Q12962 218 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 ANKRD20A2Q5SQ80 823 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 ANKRD20A1Q5TYW2 823 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 ANKRD20A3Q5VUR7 823 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 CCDC13Q8IYE1 715 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 ZNF276Q8N554 614 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 TAB3Q8N5C8 712 aaPredicted RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 GPR152Q8TDT2 470 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 HDAC11Q96DB2 347 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 FCRL2Q96LA5 508 aaPredicted RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 CLSTN3Q9BQT9 956 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 PPCSQ9HAB8 311 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 PRDM5Q9NQX1 630 aaPredicted RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 BCCIPQ9P287 314 aaKnown RBP eCLIP13.29□□□□□ -0.28
SNX1-211ENST00000560829 LGALS13Q9UHV8 139 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 SNX10Q9Y5X0 201 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 CLUHO75153 1309 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 PLXNA3P51805 1871 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 SLC38A8A6NNN8 435 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 E7EVH7 732 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 MTSS1O43312 755 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 ABLIM3O94929 683 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 MLLT6P55198 1093 aaPredicted RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 WASHC5Q12768 1159 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 RASA2Q15283 850 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 LONRF1Q17RB8 773 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 RASIP1Q5U651 963 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 TPGS2Q68CL5 300 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 KIAA1841Q6NSI8 718 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 ARHGEF18Q6ZSZ5 1173 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 TDRPQ86YL5 185 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 GPR65Q8IYL9 337 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 RIBC1Q8N443 379 aaPredicted RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 CCDC33Q8N5R6 958 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 ATP11CQ8NB49 1132 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 PYROXD1Q8WU10 500 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 TMEM169Q96HH4 297 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 EURLQ9NYK6 297 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 FETUBQ9UGM5 382 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 SLC12A6Q9UHW9 1150 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 NUDT5Q9UKK9 219 aa13.29□□□□□ -0.28
SNX1-211ENST00000560829 MRPL42Q9Y6G3 142 aaKnown RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.29□□□□□ -0.28
SNX1-211ENST00000560829 RNF103O00237 685 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 CDH16O75309 829 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 MAGEA3P43357 314 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 LMAN1P49257 510 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 LBX1P52954 281 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 TBX4P57082 545 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 GPX6P59796 221 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 PPP2R2AP63151 447 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 CDK16Q00536 496 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 AP1B1Q10567 949 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 BTG3Q14201 252 aaPredicted RBP13.28□□□□□ -0.28
SNX1-211ENST00000560829 TRIP4Q15650 581 aaPredicted RBP13.28□□□□□ -0.28
SNX1-211ENST00000560829 CCDC38Q502W7 563 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 ACBD5Q5T8D3 534 aaPredicted RBP13.28□□□□□ -0.28
SNX1-211ENST00000560829 TP53INP2Q8IXH6 220 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 LZTR1Q8N653 840 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 COLGALT1Q8NBJ5 622 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 CCNYQ8ND76 341 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 ZNF461Q8TAF7 563 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 OVCA2Q8WZ82 227 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 DPF3Q92784 378 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 TBC1D31Q96DN5 1066 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 CAPS2Q9BXY5 557 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 UBE2OQ9C0C9 1292 aaKnown RBP13.28□□□□□ -0.28
SNX1-211ENST00000560829 EIF2B3Q9NR50 452 aaKnown RBP13.28□□□□□ -0.28
SNX1-211ENST00000560829 SPG21Q9NZD8 308 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 FNIP2Q9P278 1114 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 IGSF9Q9P2J2 1179 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 HS3ST4Q9Y661 456 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 TEX264Q9Y6I9 313 aa13.28□□□□□ -0.28
SNX1-211ENST00000560829 SMIM23A6NLE4 172 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 WASH4PA8MWX3 477 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 IGLV3-27P01718 113 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 APRTP07741 180 aa13.27□□□□□ -0.28
SNX1-211ENST00000560829 RPL17P18621 184 aaKnown RBP13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms