RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 MRPS21P82921 87 aaKnown RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 ATP11AP98196 1134 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 KDSRQ06136 332 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 GFPT1Q06210 699 aaPredicted RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 SCAPQ12770 1279 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 ACAP1Q15027 740 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 C15orf59Q2T9L4 293 aaPredicted RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 C5orf22Q49AR2 442 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 C10orf76Q5T2E6 689 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 RAP1GAP2Q684P5 730 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 RFWD3Q6PCD5 774 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 LRRC31Q6UY01 552 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 TRMT11Q7Z4G4 463 aaKnown RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 C1orf210Q8IVY1 113 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 CCDC117Q8IWD4 279 aaPredicted RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 LGI2Q8N0V4 545 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 NAT16Q8N8M0 369 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 WFIKKN2Q8TEU8 576 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 CTNNBL1Q8WYA6 563 aaPredicted RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 BHMTQ93088 406 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 THAP2Q9H0W7 228 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 PRMT8Q9NR22 394 aaPredicted RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 RBM12Q9NTZ6 932 aaKnown RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 SPATA6Q9NWH7 488 aaPredicted RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 PLK2Q9NYY3 685 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 XPO7Q9UIA9 1087 aaKnown RBP13.45□□□□□ -0.26
NEDD8-208ENST00000560427 HS3ST4Q9Y661 456 aa13.45□□□□□ -0.26
NEDD8-208ENST00000560427 A0A1B0GVM2 712 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 TCAF2A6NFQ2 919 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 K7EQS6 105 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 CCP110O43303 1012 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 ATMINO43313 823 aaPredicted RBP13.44□□□□□ -0.26
NEDD8-208ENST00000560427 TIMM44O43615 452 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 TSPAN3O60637 253 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 TBL1XO60907 577 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 LUC7L3O95232 432 aaKnown RBP13.44□□□□□ -0.26
NEDD8-208ENST00000560427 CYP1A2P05177 515 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 FECHP22830 423 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 PSMA2P25787 234 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 NRG1Q02297 640 aaPredicted RBP13.44□□□□□ -0.26
NEDD8-208ENST00000560427 MTAPQ13126 283 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 CDH18Q13634 790 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 AUHQ13825 339 aaKnown RBP13.44□□□□□ -0.26
NEDD8-208ENST00000560427 CDO1Q16878 200 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 FBXL22Q6P050 247 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 Q6ZS52 159 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 FAM131BQ86XD5 332 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 MFN1Q8IWA4 741 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 CCDC170Q8IYT3 715 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 AHI1Q8N157 1196 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 UCMAQ8WVF2 138 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 EZH1Q92800 747 aaPredicted RBP13.44□□□□□ -0.26
NEDD8-208ENST00000560427 P2RY11Q96G91 374 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 CHP1Q99653 195 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 RETREG1Q9H6L5 497 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 UVRAGQ9P2Y5 699 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 FBXO4Q9UKT5 387 aa13.44□□□□□ -0.26
NEDD8-208ENST00000560427 EIF3CLB5ME19 914 aaKnown RBP13.43□□□□□ -0.26
NEDD8-208ENST00000560427 LAMTOR5O43504 91 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 CLDN11O75508 207 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 RNF8O76064 485 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 H2AFZP0C0S5 128 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 TMEM253P0C7T8 217 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 ADRA1BP35368 520 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 KIR2DL1P43626 348 aaPredicted RBP13.43□□□□□ -0.26
NEDD8-208ENST00000560427 SGSHP51688 502 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 ATXN1P54253 815 aaKnown RBP13.43□□□□□ -0.26
NEDD8-208ENST00000560427 GALCP54803 685 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 PTPN5P54829 565 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 RPS24P62847 133 aaKnown RBP13.43□□□□□ -0.26
NEDD8-208ENST00000560427 H2AFVQ71UI9 128 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 CHST9Q7L1S5 443 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 TMTC1Q8IUR5 882 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 FIBINQ8TAL6 211 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 USP33Q8TEY7 942 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 RPRD1AQ96P16 312 aaPredicted RBP13.43□□□□□ -0.26
NEDD8-208ENST00000560427 PPP1R9BQ96SB3 815 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 EIF3CQ99613 913 aaKnown RBP13.43□□□□□ -0.26
NEDD8-208ENST00000560427 OSBPL2Q9H1P3 480 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 LUC7LQ9NQ29 371 aaKnown RBP13.43□□□□□ -0.26
NEDD8-208ENST00000560427 ANLNQ9NQW6 1124 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 MYO1AQ9UBC5 1043 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 INTUQ9ULD6 942 aa13.43□□□□□ -0.26
NEDD8-208ENST00000560427 IGLV3-10A0A075B6K4 115 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 I6L893 689 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 CHRM1P11229 460 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 PABPC1P11940 636 aaKnown RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 HLA-FP30511 346 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 HOXA6P31267 233 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 PCK1P35558 622 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 CYLC1P35663 651 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 CXCL12P48061 93 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 CDH4P55283 916 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 OGDHQ02218 1023 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 MESP2Q0VG99 397 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 SLC12A1Q13621 1099 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 GAS6Q14393 721 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 PIGHQ14442 188 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 DMC1Q14565 340 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms