RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 SLC25A11Q02978 314 aaKnown RBP22.52■■□□□ 1.2
SNX1-210ENST00000560260 NR1H3Q13133 447 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 ACAP1Q15027 740 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 CA9Q16790 459 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 MPPE1Q53F39 396 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 FAM72AQ5TYM5 149 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 FAM72DQ6L9T8 149 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 KIAA1328Q86T90 577 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 FAM72BQ86X60 149 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 PYROXD2Q8N2H3 581 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 PHTF2Q8N3S3 785 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 WFDC5Q8TCV5 224 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 DDI1Q8WTU0 396 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 PPP1R9BQ96SB3 815 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 DDX50Q9BQ39 737 aaKnown RBP22.52■■□□□ 1.2
SNX1-210ENST00000560260 SNRNP25Q9BV90 132 aaKnown RBP22.52■■□□□ 1.2
SNX1-210ENST00000560260 NEU3Q9UQ49 428 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 F5P12259 2224 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 F5H5T6 163 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 TBL1XO60907 577 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 RNF8O76064 485 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 PTMAP06454 111 aaKnown RBP22.51■■□□□ 1.19
SNX1-210ENST00000560260 GLULP15104 373 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 DESP17661 470 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 TAS2R40P59535 323 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 MESDQ14696 234 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 PON2Q15165 354 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 MANEALQ5VSG8 457 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 ASTLQ6HA08 431 aaPredicted RBP22.51■■□□□ 1.19
SNX1-210ENST00000560260 SLFN11Q7Z7L1 901 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 SFTPA1Q8IWL2 248 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 ZNF687Q8N1G0 1237 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 HJURPQ8NCD3 748 aaPredicted RBP22.51■■□□□ 1.19
SNX1-210ENST00000560260 EZH1Q92800 747 aaPredicted RBP22.51■■□□□ 1.19
SNX1-210ENST00000560260 TMA16Q96EY4 203 aaKnown RBP22.51■■□□□ 1.19
SNX1-210ENST00000560260 MSANTD3Q96H12 275 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 FOXQ1Q9C009 403 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 TBC1D17Q9HA65 648 aa22.51■■□□□ 1.19
SNX1-210ENST00000560260 TMEM221A6NGB7 291 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 BTNL10A8MVZ5 291 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 M0R296 226 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 TULP3O75386 442 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 CYBBP04839 570 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 TARSP26639 723 aaKnown RBP22.5■■□□□ 1.19
SNX1-210ENST00000560260 MAN1A1P33908 653 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 KDSRQ06136 332 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 CCDC173Q0VFZ6 552 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 MTA1Q13330 715 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 ARL13BQ3SXY8 428 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 C5orf22Q49AR2 442 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 CWF19L1Q69YN2 538 aaKnown RBP22.5■■□□□ 1.19
SNX1-210ENST00000560260 FAM3CQ92520 227 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 C1orf74Q96LT6 269 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 RPRD1AQ96P16 312 aaPredicted RBP22.5■■□□□ 1.19
SNX1-210ENST00000560260 IRX2Q9BZI1 471 aaPredicted RBP22.5■■□□□ 1.19
SNX1-210ENST00000560260 OSBPL2Q9H1P3 480 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 GOLPH3Q9H4A6 298 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 LTB4R2Q9NPC1 389 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 STIM2Q9P246 746 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 FBXO10Q9UK96 956 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 USP18Q9UMW8 372 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 MTF2Q9Y483 593 aaPredicted RBP22.5■■□□□ 1.19
SNX1-210ENST00000560260 HYOU1Q9Y4L1 999 aa22.5■■□□□ 1.19
SNX1-210ENST00000560260 ANTXRLA6NF34 631 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 E9PAM4 449 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 BUB1O43683 1085 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 BUB1BO60566 1050 aaPredicted RBP22.49■■□□□ 1.19
SNX1-210ENST00000560260 CNTN5O94779 1100 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 NOP2P46087 812 aaKnown RBP22.49■■□□□ 1.19
SNX1-210ENST00000560260 GALK1P51570 392 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 NRG1Q02297 640 aaPredicted RBP22.49■■□□□ 1.19
SNX1-210ENST00000560260 SEMA3BQ13214 749 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 SMTNL2Q2TAL5 461 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 EFHC2Q5JST6 749 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 FSTL4Q6MZW2 842 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 CD101Q93033 1021 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 C11orf16Q9NQ32 467 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 DNAJC17Q9NVM6 304 aaKnown RBP22.49■■□□□ 1.19
SNX1-210ENST00000560260 AP4E1Q9UPM8 1137 aa22.49■■□□□ 1.19
SNX1-210ENST00000560260 IGLV3-10A0A075B6K4 115 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 MAN2B1O00754 1011 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 PRPSAP2O60256 369 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 CISD3P0C7P0 127 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 EIF2DP41214 584 aaKnown RBP22.48■■□□□ 1.19
SNX1-210ENST00000560260 AIF1P55008 147 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 ALFQ53S48 1182 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 KCNT1Q5JUK3 1230 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 MPP7Q5T2T1 576 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 KCTD15Q96SI1 283 aaPredicted RBP22.48■■□□□ 1.19
SNX1-210ENST00000560260 P2RY13Q9BPV8 354 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 ZWILCHQ9H900 591 aa22.48■■□□□ 1.19
SNX1-210ENST00000560260 NDRG2Q9UN36 371 aaKnown RBP22.48■■□□□ 1.19
SNX1-210ENST00000560260 KANSL1LA0AUZ9 987 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 DRGXA6NNA5 263 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 LRIG2O94898 1065 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 RARAP10276 462 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 ARHGAP25P42331 645 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 TMEM196Q5HYL7 178 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 RABGAP1LQ5R372 815 aa22.47■■□□□ 1.19
SNX1-210ENST00000560260 ERMARDQ5T6L9 678 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms