RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 FRMD8Q9BZ67 464 aaPredicted RBP13.08□□□□□ -0.32
USP3-213ENST00000559711 KLC2Q9H0B6 622 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 XPO7Q9UIA9 1087 aaKnown RBP13.08□□□□□ -0.32
USP3-213ENST00000559711 ZMYND8Q9ULU4 1186 aaPredicted RBP13.08□□□□□ -0.32
USP3-213ENST00000559711 GOLGA8MH3BSY2 632 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 C2CD2LO14523 706 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 MX2P20592 715 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 SERPINB6P35237 376 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 PPM1AP35813 382 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 TBX4P57082 545 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 GAD2Q05329 585 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 PDIA2Q13087 525 aaKnown RBP13.07□□□□□ -0.32
USP3-213ENST00000559711 RAB33AQ14088 237 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 TRIP4Q15650 581 aaPredicted RBP13.07□□□□□ -0.32
USP3-213ENST00000559711 FNBP1LQ5T0N5 605 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 SNX30Q5VWJ9 437 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 PPP1R21Q6ZMI0 780 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 OTOP2Q7RTS6 562 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 PDIK1LQ8N165 341 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 SH2D3CQ8N5H7 860 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 NPWQ8N729 165 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 UHMK1Q8TAS1 419 aaKnown RBP13.07□□□□□ -0.32
USP3-213ENST00000559711 OVCA2Q8WZ82 227 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 TLCD1Q96CP7 247 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 P2RY11Q96G91 374 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 YME1L1Q96TA2 773 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 SIK2Q9H0K1 926 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 ETNK1Q9HBU6 452 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 PSD3Q9NYI0 1048 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 STK39Q9UEW8 545 aa13.07□□□□□ -0.32
USP3-213ENST00000559711 RASGRF2O14827 1237 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 FGF10O15520 208 aaPredicted RBP13.06□□□□□ -0.32
USP3-213ENST00000559711 OPHN1O60890 802 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 STK10O94804 968 aaKnown RBP13.06□□□□□ -0.32
USP3-213ENST00000559711 SEC24AO95486 1093 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 METTL18O95568 372 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 TBX18O95935 607 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 FGBP02675 491 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 HTRA4P83105 476 aaPredicted RBP13.06□□□□□ -0.32
USP3-213ENST00000559711 PPIDQ08752 370 aaKnown RBP13.06□□□□□ -0.32
USP3-213ENST00000559711 GALNT2Q10471 571 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 AP1B1Q10567 949 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 WASHC5Q12768 1159 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 EFEMP1Q12805 493 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 PPIGQ13427 754 aaKnown RBP eCLIP13.06□□□□□ -0.321e-7■■■□□ 14.6
USP3-213ENST00000559711 SEMA5AQ13591 1074 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 STAT4Q14765 748 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 FASTKD3Q14CZ7 662 aaKnown RBP13.06□□□□□ -0.32
USP3-213ENST00000559711 MSS51Q4VC12 460 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 TNFAIP8L3Q5GJ75 292 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 ANKRD20A2Q5SQ80 823 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 ANKRD20A1Q5TYW2 823 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 ANKRD20A3Q5VUR7 823 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 TP53INP2Q8IXH6 220 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 ZBED8Q8IZ13 594 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 VPS52Q8N1B4 723 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 TAB3Q8N5C8 712 aaPredicted RBP13.06□□□□□ -0.32
USP3-213ENST00000559711 LZTR1Q8N653 840 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 CCNYQ8ND76 341 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 MCUQ8NE86 351 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 TBC1D31Q96DN5 1066 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 CDK5RAP1Q96SZ6 601 aaKnown RBP13.06□□□□□ -0.32
USP3-213ENST00000559711 CENPHQ9H3R5 247 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 MAFFQ9ULX9 164 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 HS3ST4Q9Y661 456 aa13.06□□□□□ -0.32
USP3-213ENST00000559711 WASH4PA8MWX3 477 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 RNF103O00237 685 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 LILRB3O75022 631 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 GJB5O95377 273 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 IGLV3-27P01718 113 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 URODP06132 367 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 LINC00271P0C7V0 271 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 SRGAP2BP0DMP2 458 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 TSHRP16473 764 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 TPSB2P20231 275 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 FDFT1P37268 417 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 RING1Q06587 406 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 ZNF33AQ06730 810 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 TPSAB1Q15661 275 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 C10orf120Q5SQS8 335 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 ACBD5Q5T8D3 534 aaPredicted RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 ARHGEF18Q6ZSZ5 1173 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 ZNF683Q8IZ20 524 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 NETO2Q8NC67 525 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 PDZD8Q8NEN9 1154 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 HDAC11Q96DB2 347 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 MYRFLQ96LU7 910 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 SERPINB12Q96P63 405 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 CCDC77Q9BR77 488 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 CATSPERBQ9H7T0 1116 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 MARCH2Q9P0N8 246 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 FNIP2Q9P278 1114 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 MKI67P46013 3256 aaKnown RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 PLXNA3P51805 1871 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 A0A087WUV0 522 aaPredicted RBP13.05□□□□□ -0.32
USP3-213ENST00000559711 TLDC2A0PJX2 215 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 E9PAM4 449 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 MTSS1O43312 755 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 APOEP02649 317 aa13.05□□□□□ -0.32
USP3-213ENST00000559711 CSH1P0DML2 217 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms