RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SEMA5AQ13591 1074 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 RASA2Q15283 850 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 TTC39BQ5VTQ0 682 aaPredicted RBP10.93□□□□□ -0.66
CUX1-217ENST00000558836 RWDD4Q6NW29 188 aaKnown RBP10.93□□□□□ -0.66
CUX1-217ENST00000558836 BNIPLQ7Z465 357 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 VSIG1Q86XK7 387 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 TMEM86AQ8N2M4 240 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 ARMC2Q8NEN0 867 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 OR52K1Q8NGK4 314 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 GSDMBQ8TAX9 411 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 USP33Q8TEY7 942 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 SMARCD1Q96GM5 515 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 TMEM237Q96Q45 408 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 IQCGQ9H095 443 aaKnown RBP10.93□□□□□ -0.66
CUX1-217ENST00000558836 TRPV6Q9H1D0 765 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 PPCSQ9HAB8 311 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 CHST12Q9NRB3 414 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 CDH9Q9ULB4 789 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 PSAT1Q9Y617 370 aa10.93□□□□□ -0.66
CUX1-217ENST00000558836 A0A0U1RQF3 1178 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 TMEM88BA6NKF7 163 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 DCLK1O15075 740 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 AOC2O75106 756 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 LRIG2O94898 1065 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 TARSP26639 723 aaKnown RBP10.92□□□□□ -0.66
CUX1-217ENST00000558836 MAGEA6P43360 314 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ABCG1P45844 678 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 SREBF2Q12772 1141 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 PDK1Q15118 436 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ZNF449Q6P9G9 518 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 TAC4Q86UU9 113 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 MCUQ8NE86 351 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 GPR152Q8TDT2 470 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 STAMBPL1Q96FJ0 436 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 RXFP1Q9HBX9 757 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 CNGB3Q9NQW8 809 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 SYBUQ9NX95 663 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 FBXW11Q9UKB1 542 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 STARD13Q9Y3M8 1113 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 A8MUI8 341 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ZBTB24O43167 697 aaPredicted RBP10.92□□□□□ -0.66
CUX1-217ENST00000558836 KPNA6O60684 536 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 RFPL1O75677 317 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 KRT37O76014 449 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 MYCP01106 439 aaPredicted RBP10.92□□□□□ -0.66
CUX1-217ENST00000558836 SNRPAP09012 282 aaKnown RBP10.92□□□□□ -0.66
CUX1-217ENST00000558836 ERVK-10P10266 1014 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ODC1P11926 461 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 TPH1P17752 444 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 PRKCHP24723 683 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ETV4P43268 484 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 SLC18A1P54219 525 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ITGA7Q13683 1181 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 PRKD1Q15139 912 aaPredicted RBP10.92□□□□□ -0.66
CUX1-217ENST00000558836 GALNTL6Q49A17 601 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 OVOS1Q6IE37 1185 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 APOPT1Q96IL0 206 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 TSPAN18Q96SJ8 248 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 CDH23Q9H251 3354 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ZNF487B1APH4 448 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 GOLGA8TH3BQL2 631 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 TPSB2P20231 275 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 PCSK1P29120 753 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 MNAT1P51948 309 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 BNIP1Q12981 228 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 TPSAB1Q15661 275 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 RAB41Q5JT25 222 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 C16orf46Q6P387 395 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ARHGAP36Q6ZRI8 547 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 SCN4BQ8IWT1 228 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 NDUFAF2Q8N183 169 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 ARNTL2Q8WYA1 636 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 KLHL29Q96CT2 875 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 B3GALT6Q96L58 329 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 HAO1Q9UJM8 370 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 PRG3Q9Y2Y8 225 aaPredicted RBP10.92□□□□□ -0.66
CUX1-217ENST00000558836 PCDHA11Q9Y5I1 949 aa10.92□□□□□ -0.66
CUX1-217ENST00000558836 SDR42E2A6NKP2 422 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 TM9SF1O15321 606 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 SPAG6O75602 509 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 DNAJC8O75937 253 aaPredicted RBP10.91□□□□□ -0.66
CUX1-217ENST00000558836 CBX6O95503 412 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 MOCS2O96007 188 aaPredicted RBP10.91□□□□□ -0.66
CUX1-217ENST00000558836 KITP10721 976 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 PTPN3P26045 913 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 GRIK1P39086 918 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 NEK3P51956 506 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 ELF3P78545 371 aaPredicted RBP10.91□□□□□ -0.66
CUX1-217ENST00000558836 ZBTB17Q13105 803 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 PPP2R5DQ14738 602 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 INTS6LQ5JSJ4 861 aaKnown RBP10.91□□□□□ -0.66
CUX1-217ENST00000558836 CES4AQ5XG92 561 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 ZCCHC23Q6ZST2 131 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 MRPL10Q7Z7H8 261 aaKnown RBP10.91□□□□□ -0.66
CUX1-217ENST00000558836 MTDHQ86UE4 582 aaKnown RBP10.91□□□□□ -0.66
CUX1-217ENST00000558836 RTN4RL1Q86UN2 441 aaPredicted RBP10.91□□□□□ -0.66
CUX1-217ENST00000558836 METTL23Q86XA0 190 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 RSPH1Q8WYR4 309 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 LRRC37BQ96QE4 947 aa10.91□□□□□ -0.66
CUX1-217ENST00000558836 XAB2Q9HCS7 855 aaKnown RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms