RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 KRTAP15-1Q3LI76 137 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 RNF220Q5VTB9 566 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 CCSAPQ6IQ19 270 aaPredicted RBP6.78□□□□□ -1.32
RTF1-204ENST00000558117 TOR1AIP2Q8NFQ8 470 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 LPIN2Q92539 896 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 SLC46A1Q96NT5 459 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 TTYH3Q9C0H2 523 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 HESX1Q9UBX0 185 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 PLEKHM1Q9Y4G2 1056 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 LRRFIP2Q9Y608 721 aaKnown RBP6.78□□□□□ -1.32
RTF1-204ENST00000558117 RAD54BQ9Y620 910 aa6.78□□□□□ -1.32
RTF1-204ENST00000558117 ELP1O95163 1332 aa6.77□□□□□ -1.32
RTF1-204ENST00000558117 TENM4Q6N022 2769 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 A0A0B4J269 797 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 ZAR1LA6NP61 321 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 MYO1FO00160 1098 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 BTN3A1O00481 513 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 TBX3O15119 743 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 YY2O15391 372 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 TRIAP1O43715 76 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 TYRP1P17643 537 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 ITGALP20701 1170 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 SLC7A1P30825 629 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 NDUFV1P49821 464 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 UCP3P55916 312 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 TUBB3Q13509 450 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 SRGAP1Q7Z6B7 1085 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 DGKHQ86XP1 1220 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 KLHDC9Q8NEP7 349 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 CAGE1Q8TC20 777 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 KBTBD7Q8WVZ9 684 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 RUBCNQ92622 972 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 FBXL20Q96IG2 436 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 C8orf48Q96LL4 319 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 PAGR1Q9BTK6 254 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 SPATA5L1Q9BVQ7 753 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 HIPK3Q9H422 1215 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 MYH16Q9H6N6 1097 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 XPR1Q9UBH6 696 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 CPNE7Q9UBL6 633 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 RFX7Q2KHR2 1363 aa6.77□□□□□ -1.33
RTF1-204ENST00000558117 SPEF2Q9C093 1822 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 SPTA1P02549 2419 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 KIF28PB7ZC32 967 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 HRGP04196 525 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 PPP3CBP16298 524 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 ADRA1BP35368 520 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 FOLR3P41439 243 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 SLC11A2P49281 568 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 ZNF134P52741 427 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 CTBP1Q13363 440 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 TCEAL5Q5H9L2 206 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 VWA1Q6PCB0 445 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 CCDC191Q8NCU4 936 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 CYP2W1Q8TAV3 490 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 MRPL38Q96DV4 380 aaKnown RBP6.76□□□□□ -1.33
RTF1-204ENST00000558117 RTKNQ9BST9 563 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 DPH1Q9BZG8 443 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 SMURF2Q9HAU4 748 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 TLK1Q9UKI8 766 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 ANGPTL2Q9UKU9 493 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 MTUS1Q9ULD2 1270 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 TPCN1Q9ULQ1 816 aa6.76□□□□□ -1.33
RTF1-204ENST00000558117 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.76□□□□□ -1.33
RTF1-204ENST00000558117 MAP4K4O95819 1239 aaPredicted RBP6.75□□□□□ -1.33
RTF1-204ENST00000558117 THP07101 528 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 RHCEP18577 417 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 SUMO3P55854 103 aaPredicted RBP6.75□□□□□ -1.33
RTF1-204ENST00000558117 RHDQ02161 417 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 ITIH3Q06033 890 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 LONRF3Q496Y0 759 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 SOWAHCQ53LP3 525 aaPredicted RBP6.75□□□□□ -1.33
RTF1-204ENST00000558117 CDC42EP5Q6NZY7 148 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 DARS2Q6PI48 645 aaKnown RBP6.75□□□□□ -1.33
RTF1-204ENST00000558117 TMEM108Q6UXF1 575 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 ZNF783Q6ZMS7 281 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.75□□□□□ -1.33
RTF1-204ENST00000558117 SLC15A4Q8N697 577 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 OR6B3Q8NGW1 331 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 LRTOMTQ8WZ04 291 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 MAML1Q92585 1016 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 PGBD1Q96JS3 809 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 MPHOSPH8Q99549 860 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 DUSP26Q9BV47 211 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 AMBRA1Q9C0C7 1298 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 KIAA1586Q9HCI6 787 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 TMX2Q9Y320 296 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 RABGAP1Q9Y3P9 1069 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 INSL6Q9Y581 213 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 PCDHGB6Q9Y5F9 930 aa6.75□□□□□ -1.33
RTF1-204ENST00000558117 SMCHD1A6NHR9 2005 aa6.74□□□□□ -1.33
RTF1-204ENST00000558117 ROBO3Q96MS0 1386 aa6.74□□□□□ -1.33
RTF1-204ENST00000558117 A0A0U1RQG5 324 aaPredicted RBP6.74□□□□□ -1.33
RTF1-204ENST00000558117 TMEM233B4DJY2 109 aa6.74□□□□□ -1.33
RTF1-204ENST00000558117 MPPED1O15442 326 aa6.74□□□□□ -1.33
RTF1-204ENST00000558117 PROM1O43490 865 aa6.74□□□□□ -1.33
RTF1-204ENST00000558117 ICAM3P32942 547 aa6.74□□□□□ -1.33
RTF1-204ENST00000558117 NXPH1P58417 271 aa6.74□□□□□ -1.33
RTF1-204ENST00000558117 LILRA4P59901 499 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms