RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 HPDLQ96IR7 371 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 C12orf42Q96LP6 360 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 VPS33BQ9H267 617 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 QTRT2Q9H974 415 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 TMCO1Q9UM00 188 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 TNFSF13BQ9Y275 285 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 PCDHB12Q9Y5F1 795 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 CAPN8A6NHC0 703 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 ZMPSTE24O75844 475 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 HSPA1LP34931 641 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 CRADDP78560 199 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 SLC6A3Q01959 620 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 CXCL9Q07325 125 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 INCA1Q0VD86 236 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 SNAPC2Q13487 334 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 GOLGA7BQ2TAP0 167 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 METTL21CQ5VZV1 264 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 ARMC3Q5W041 872 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 EPGNQ6UW88 154 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 TTC39CQ8N584 583 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 NMD3Q96D46 503 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 DCUN1D1Q96GG9 259 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 ZNF668Q96K58 619 aaPredicted RBP12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 SERPINI1Q99574 410 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 NAT9Q9BTE0 207 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 DHX35Q9H5Z1 703 aaKnown RBP12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 COG4Q9H9E3 785 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 PICK1Q9NRD5 415 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 CLIC5Q9NZA1 410 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 PTTG2Q9NZH5 202 aa12.14□□□□□ -0.47
VIPAS39-211ENST00000557658 IGKV6-21A0A0C4DH24 114 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 OR6B1O95007 311 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PGM3O95394 542 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 HSPA4LO95757 839 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 APBA3O96018 575 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PFKMP08237 780 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 STAG3L1P0CL83 205 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 SMIM18P0DKX4 95 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 HDAC4P56524 1084 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 SESN2P58004 480 aaPredicted RBP12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 DPYSL2Q16555 572 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PABPC1LQ4VXU2 614 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PPM1JQ5JR12 505 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 CATSPERGQ6ZRH7 1159 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 HACE1Q8IYU2 909 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 CXorf38Q8TB03 319 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 HTR3CQ8WXA8 447 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 MPP4Q96JB8 637 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PRICKLE1Q96MT3 831 aaPredicted RBP12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 NT5C1AQ9BXI3 368 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 CDH19Q9H159 772 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 RNPEPQ9H4A4 650 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PRPF19Q9UMS4 504 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PSAT1Q9Y617 370 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 A0A0A0MRY4 1105 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 E9PBE3 544 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 KLHL41O60662 606 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 CLPTM1O96005 669 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PTPRAP18433 802 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 MGAT1P26572 445 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PMLP29590 882 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 GP5P40197 560 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 RANBP1P43487 201 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 TLR1Q15399 786 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 CNGA3Q16281 694 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 RARS2Q5T160 578 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 METTL7BQ6UX53 244 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 LCA5Q86VQ0 697 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 CATSPER1Q8NEC5 780 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 CHST13Q8NET6 341 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 SREK1Q8WXA9 508 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 SPATA13Q96N96 652 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 OCEL1Q9H607 264 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 EIF2B3Q9NR50 452 aaKnown RBP12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 STK39Q9UEW8 545 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 PHF24Q9UPV7 400 aa12.13□□□□□ -0.47
VIPAS39-211ENST00000557658 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 HACD1B0YJ81 288 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 C19orf81C9J6K1 198 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 GPR25O00155 361 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 ZBTB14O43829 449 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 LGR5O75473 907 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 STK10O94804 968 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 ASLP04424 464 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 THRAP10827 490 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 CLCN2P51788 898 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 SNX16P57768 344 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 USP4Q13107 963 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 DCAF15Q66K64 600 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 PMF1Q6P1K2 205 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 C16orf89Q6UX73 402 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 COLGALT1Q8NBJ5 622 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 AFG1LQ8WV93 481 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 KHSRPQ92945 711 aaKnown RBP eCLIP12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 ZFRQ96KR1 1074 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 LRGUKQ96M69 825 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 FAM124BQ9H5Z6 455 aaPredicted RBP12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 ASB7Q9H672 318 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 HOXC10Q9NYD6 342 aa12.12□□□□□ -0.47
VIPAS39-211ENST00000557658 HESX1Q9UBX0 185 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms