RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CAPN15O75808 1086 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 PENKP01210 267 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-232ENST00000557487 RALBP11234 206 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 ITGAXP20702 1163 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 MSLNQ13421 630 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-232ENST00000557487 PDK3Q15120 406 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 GRTP1Q5TC63 336 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 EEF1DP3Q658K8 133 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 DENND5BQ6ZUT9 1274 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 EGFL6Q8IUX8 553 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 MARVELD2Q8N4S9 558 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 OPTNQ96CV9 577 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 INO80BQ9C086 356 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-232ENST00000557487 TXNDC16Q9P2K2 825 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 RCOR3Q9P2K3 495 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-232ENST00000557487 ADAMTS6Q9UKP5 1117 aa16.74■□□□□ 0.27
SHMT2-232ENST00000557487 ADM5C9JUS6 153 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 LYPLA1O75608 230 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-232ENST00000557487 ITGA2BP08514 1039 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 SERPINB6P35237 376 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 RGS2P41220 211 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 NDST1P52848 882 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 EPHB1P54762 984 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 OSTNP61366 133 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 RBP5P82980 135 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 MBTD1Q05BQ5 628 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 TBL3Q12788 808 aaKnown RBP16.73■□□□□ 0.27
SHMT2-232ENST00000557487 ORC1Q13415 861 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 FRG1Q14331 258 aaKnown RBP16.73■□□□□ 0.27
SHMT2-232ENST00000557487 RALGPS1Q5JS13 557 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 CST9Q5W186 159 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 JADE1Q6IE81 842 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 ZFP1Q6P2D0 407 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 MAVSQ7Z434 540 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 ALDH16A1Q8IZ83 802 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 DEFB107AQ8IZN7 70 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 DRAXINQ8NBI3 349 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-232ENST00000557487 CPNE1Q99829 537 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 GPATCH2LQ9NWQ4 482 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 MID2Q9UJV3 735 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 VPS28Q9UK41 221 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 PSMD13Q9UNM6 376 aa16.73■□□□□ 0.27
SHMT2-232ENST00000557487 PFKMP08237 780 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 STAG3L1P0CL83 205 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 COX4I1P13073 169 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 RAG1P15918 1043 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 KCNA4P22459 653 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 ADSLP30566 484 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-232ENST00000557487 GP5P40197 560 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 MAGEA12P43365 314 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 NUMBP49757 651 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 AQP4P55087 323 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 TRIP10Q15642 601 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 PKDCCQ504Y2 493 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 KCNT2Q6UVM3 1135 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 RNF111Q6ZNA4 994 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 SETD3Q86TU7 594 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-232ENST00000557487 C10orf107Q8IVU9 208 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 TFB1MQ8WVM0 346 aaKnown RBP16.72■□□□□ 0.27
SHMT2-232ENST00000557487 HTR3CQ8WXA8 447 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 CENPIQ92674 756 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-232ENST00000557487 MPHOSPH6Q99547 160 aaKnown RBP16.72■□□□□ 0.27
SHMT2-232ENST00000557487 NDNQ99608 321 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 BTBD7Q9P203 1132 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 TMCO1Q9UM00 188 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-232ENST00000557487 WDR27A2RRH5 827 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 KPNA7A9QM74 516 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 ZBTB42B2RXF5 422 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 DGKIO75912 1065 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 CYP2C8P10632 490 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 THRAP10827 490 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 CPA3P15088 417 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 CYP3A5P20815 502 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 PEX2P28328 305 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 HDAC4P56524 1084 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 CA9Q16790 459 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 GOLGA7BQ2TAP0 167 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 SPANXN3Q5MJ09 141 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 C16orf46Q6P387 395 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 EPGNQ6UW88 154 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 UGT2A3Q6UWM9 527 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 C16orf89Q6UX73 402 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 PSTKQ8IV42 348 aaKnown RBP16.72■□□□□ 0.27
SHMT2-232ENST00000557487 POU5F2Q8N7G0 328 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 DGCR14Q96DF8 476 aaKnown RBP16.72■□□□□ 0.27
SHMT2-232ENST00000557487 CDH19Q9H159 772 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 STK39Q9UEW8 545 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 RAB26Q9ULW5 256 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 DTNAQ9Y4J8 743 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 AFG3L2Q9Y4W6 797 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 PPP2R3BQ9Y5P8 575 aa16.72■□□□□ 0.27
SHMT2-232ENST00000557487 CREB3O43889 395 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 TYK2P29597 1187 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 PHKA2P46019 1235 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 HSPA13P48723 471 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 PRKAA2P54646 552 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 GBE1Q04446 702 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 TMEM132DQ14C87 1099 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 RAB6CQ53S08 254 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms