RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 HDAC9Q9UKV0 1011 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 PSME2Q9UL46 239 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 COL5A2P05997 1499 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-226ENST00000556825 PRSS51A0A1B0GVH4 220 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 hCG_1642624A0A1W2PR95 340 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 PDPK1O15530 556 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 SLC9A1P19634 815 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 GSTM2P28161 218 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 ETV4P43268 484 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 CABP4P57796 275 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 MRPS22P82650 360 aaKnown RBP14.16□□□□□ -0.14
SHMT2-226ENST00000556825 TMPRSS15P98073 1019 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 CENPCQ03188 943 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 PDIA2Q13087 525 aaKnown RBP14.16□□□□□ -0.14
SHMT2-226ENST00000556825 SH3BP5LQ7L8J4 393 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 ZCCHC9Q8N567 271 aaKnown RBP14.16□□□□□ -0.14
SHMT2-226ENST00000556825 EFCAB3Q8N7B9 438 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 XAGE3Q8WTP9 111 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 CELF1Q92879 486 aaKnown RBP14.16□□□□□ -0.14
SHMT2-226ENST00000556825 TTC17Q96AE7 1141 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 DACT3Q96B18 629 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-226ENST00000556825 DEPDC7Q96QD5 511 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 STN1Q9H668 368 aaKnown RBP14.16□□□□□ -0.14
SHMT2-226ENST00000556825 ATP13A3Q9H7F0 1226 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 MCM9Q9NXL9 1143 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 ZNF229Q9UJW7 825 aa14.16□□□□□ -0.14
SHMT2-226ENST00000556825 MYO3BQ8WXR4 1341 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 KDM3AQ9Y4C1 1321 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 TYW5A2RUC4 315 aaKnown RBP14.15□□□□□ -0.14
SHMT2-226ENST00000556825 C12orf71A8MTZ7 269 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 I3L4J1 428 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 GH2P01242 217 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 RRM1P23921 792 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 EEF1DP29692 281 aaKnown RBP14.15□□□□□ -0.14
SHMT2-226ENST00000556825 ETV1P50549 477 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 JAM2P57087 298 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 VAC14Q08AM6 782 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 C6orf132Q5T0Z8 1188 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 COPS6Q7L5N1 327 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 ARID3BQ8IVW6 561 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-226ENST00000556825 REXO1Q8N1G1 1221 aaKnown RBP14.15□□□□□ -0.14
SHMT2-226ENST00000556825 CADM2Q8N3J6 435 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 OLIG1Q8TAK6 271 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 MARVELD3Q96A59 401 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 TMEM121Q9BTD3 319 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 DPEP3Q9H4B8 488 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 RAD21L1Q9H4I0 556 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 GPN2Q9H9Y4 310 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-226ENST00000556825 SAYSD1Q9NPB0 183 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 TIGARQ9NQ88 270 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 PKD2L2Q9NZM6 624 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 KCND2Q9NZV8 630 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 CNTN3Q9P232 1028 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 NDUFS2O75306 463 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 MFN2O95140 757 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 NTRK1P04629 796 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 SNRPAP09012 282 aaKnown RBP14.15□□□□□ -0.14
SHMT2-226ENST00000556825 PCNAP12004 261 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 ATF4P18848 351 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-226ENST00000556825 CLCNKBP51801 687 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 BLVRAP53004 296 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 PRAMEP78395 509 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 GPLD1P80108 840 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 KCNH2Q12809 1159 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 IKBKEQ14164 716 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 NRF1Q16656 503 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 LEXMQ3ZCV2 418 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 AASDHQ4L235 1098 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-226ENST00000556825 LINC00299Q6ZSB3 139 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 DENND5BQ6ZUT9 1274 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 SNX29P2Q8IUI4 249 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 LEMD2Q8NC56 503 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 SLC2A14Q8TDB8 520 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 SH3KBP1Q96B97 665 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 NGLY1Q96IV0 654 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 ZSCAN5AQ9BUG6 496 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 TRIM15Q9C019 465 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 ADNPQ9H2P0 1102 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 KANSL2Q9H9L4 492 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 POLR1BQ9H9Y6 1135 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 XPNPEP1Q9NQW7 623 aa14.15□□□□□ -0.14
SHMT2-226ENST00000556825 FAM25AB3EWG3 89 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 FAM25CB3EWG5 89 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 FAM25GB3EWG6 89 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 UBAP1LF5GYI3 381 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 EYA2O00167 538 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 PLOD2O00469 737 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 FSCN2O14926 492 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 NMT2O60551 498 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 DEAF1O75398 565 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 CCNKO75909 580 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 DLATP10515 647 aaKnown RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 RBL1P28749 1068 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 LEPRP48357 1165 aaKnown RBP14.14□□□□□ -0.15
SHMT2-226ENST00000556825 PRKAA2P54646 552 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 RAD23AP54725 363 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 TRPC3Q13507 836 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 ALX1Q15699 326 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 LDLRAP1Q5SW96 308 aa14.14□□□□□ -0.15
SHMT2-226ENST00000556825 IZUMO3Q5VZ72 239 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms